NONHSAT101866
Revision as of 01:20, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT101866 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1099 nt |
Genomic location |
chr5+:68024251..68026343 |
Exon number |
2 |
Exons |
68024251..68024485,68025480..68026343 |
Genome context |
|
Sequence |
000001 AGAATAAGCA AATAGACATT AGATATCACA GATATGTCAT ACTGAAAAGA GCACAGGAGG TCTCAATCTT TTCTGTTGTG 000080
000081 TACTCGTTTT GCACGTAATC ATACAGTGGT GGGCCCATAG CTGTTGAATA TAAAATATAT TACAAACTGC CCAAATCAAT 000160 000161 TATTCTGCTA TAGCATATTC TTCCTGTCAA ATATATGCTC CTGTCTGCAT TCAtttttat ttatttattt attttAATAA 000240 000241 AAGACTGGCT GGCATTTCAT AGAAAGATCT AGAAAGCAAT GCCGTTTCAG TTTGCATGTC ATAGAAGCAA CTCCTCTTCA 000320 000321 GCCTATATGT CATGTTTTCT GTTTTATTTC TCTCGTTTTC TTATACCAGC AAATTGTCAT CTGCTCCCGA TGTTTATCCC 000400 000401 CTATTTAAAG ACACAGTAGC AGTTTGTGAA GCCAGCAGTT CTCTGCCAAT GCTGTCACAC ACACTCCTGT TCCCCCCAGG 000480 000481 TCTGTGGCTC TGAAGGCCTG ATCTTCAACA AGCAGTGACA CAAAACCACT ACTGTTCCAT CCAGAGGGAG TTGCTGCTGT 000560 000561 GCAGCGCATG TTACAGGATC AAGCCCCAAG TGAGGAACAT AAGAGAAATC ATAGAAGGCA AGTAAAATAG AAATGTGTTC 000640 000641 CTCATGCAAA CACTCCAAGC AATTAAAAAT AAAATGAAGG AAAGCATGAA CTAAAATAGA AAACTGTAGT GATGGAACAC 000720 000721 TTTTGAAATC AAAGATCGTG CTTCTTTCCT TACTCTCTGG AACTCTAAAT CATTACTTAG GTGAATTTAT GTCTGTTTTC 000800 000801 AACATTTCTG TTAAACACGA CAAAGAGCTG GACCCTAGTT GCTGGTTGCC AGGCAGGCTA CACCCCAGAA GGTCAGAATG 000880 000881 CATAATTAAT CCACGGGAGG CTGCAGGAGA TTTGTTATCT GGGAGCCTTT AGGTTCCCCA TGCACAGACT TCTGCATGCC 000960 000961 AGAGCAGGTT GCACCTAATA AAGTTTTCAA GGTGATTCTG ACTTTCTTCA CCACTCCTCA CCCCCAGCTT CCTCCTAGGC 001040 001041 ATTTCCAGCC TACTTATCCC AATATTTCAG GAAAGGCACG ATCTCCTTCA AACACCACA |
Predicted Small Protein
Name | NONHSAT101866_smProtein_788:931 |
Length | 48 |
Molecular weight | 5245.9709 |
Aromaticity | 0.0425531914894 |
Instability index | 79.4106382979 |
Isoelectric point | 6.69952392578 |
Runs | 7 |
Runs residual | 0.0173404255319 |
Runs probability | 0.036931889873 |
Amino acid sequence | MSVFNISVKHDKELDPSCWLPGRLHPRRSECIINPREAAGDLLSGSL |
Secondary structure | LLEEEEEELLLLLLLLLLLLLLLLLLLLLEEEELHHHHHHHHHLLLL |
PRMN | - |
PiMo | - |