NONHSAT101961

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT101961

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1016 nt

Genomic location

chr5-:69423289..69521622

Exon number

7

Exons

69423289..69423523,69424180..69424261,69438158..69438272,69493082..69493217,69515745..69515919,69517758..69517842,69521435..69521622

Genome context

Sequence
000001 GGCTGGTGAA TTACCAGATC TCCGTCAAGT GCAGTAACCA GTTCAAGTTG GAAGTGTGTC TTTTGAATGC AGAAAACAAA 000080
000081 GTCGTGGACA ACCAGGCTGG GACCCAGGGC CAGCTGAAGG TGCTGGGTGC CAACCTCTGG TGGCCGTACC TGATGCACGA 000160
000161 ACACCCCGCC TACCTGTACT CGTGGGAGGA TGGTGATTGC TCACACCAAA GCCTTGGACC CCTCCCAGCC TGTGACCTTT 000240
000241 GTGACCAACT CCACCTACGC AGCAGACAAG GGGGCTCTGT ATGTGGATGT GATCCGTGTG AACAGCTACT ACTCTTGGTA 000320
000321 TCGCAACTAC GGGCACCTGG AGTTGATTCA GCTGCAGCTG GCCGCCCAGT TTGAGAATTG GTGTAAGACA TCACAATCCC 000400
000401 ATTATTCAGA GCGCGTATGG AGTGGAAACG CTTGTAGGGT TTCACCAGGA TCCACCTCTG ATGTTCAGTG AAGAGGACCG 000480
000481 GAAAAGTCTG CTAGAGCAGT ACCATCTGGG TCTGGATCAA AAACGCAGAA AATACGTGGT TGGAGAGCTC ATCTGGAATT 000560
000561 TTGCCGATTT CATGACTAAC CAGTGTGTCA GTTTCTTGGT CGGGAATGAA AATAGTGCCA ACCTGTGATA CCTTCACTCT 000640
000641 AATTTTACTT TCTGAGGAAG TTTTCTGTAA TAGTTATTTG GTGATAATTA TTAATACTGA TGTGAATTTC TTCGGAGTAA 000720
000721 GAAATCCTCA GAGGAAATTA CCCAGTATAT TCAAAGCTAC AAGGGATTTG TTGACATAAC GGTCTGTTTT CAAGGTCAGT 000800
000801 TTCCGGAAAC AGTGACCCTG AGAAGGCTTC CTCCTGAGTA TGCATAAACA TTCACAGCTT GCATGCGTGT GTGTGTGTGT 000880
000881 GTGTGTGTGT GTGTGTGTGT GTGTATGTTT GCTTGCACTG CATAAAAACA ATTGCAACAT CAACAGAAAT AAAAATTAAA 000960
000961 GGAATAATTC TCCTCCGACT CTGCCGTTCC ATCCAGTGAA ACTCTTCATT CTGGGG
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Predicted Small Protein

Name NONHSAT101961_smProtein_152:373
Length 74
Molecular weight 7831.7538
Aromaticity 0.041095890411
Instability index 77.7904109589
Isoelectric point 4.97308349609
Runs 11
Runs residual 0.00653999116217
Runs probability 0.0416084533732
Amino acid sequence MHEHPAYLYSWEDGDCSHQSLGPLPACDLCDQLHLRSRQGGSVCGCDPCEQLLLLVSQLR
APGVDSAAAGRPV
Secondary structure LLLLLLEEEELLLLLLLLLLLLLLLLLLHHHHHLHHHLLLLLEELLLHHHHHHHHHHHHH
LLLLLLLLLLLLL
PRMN -
PiMo -