NONHSAT101961
Revision as of 01:21, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT101961 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1016 nt |
Genomic location |
chr5-:69423289..69521622 |
Exon number |
7 |
Exons |
69423289..69423523,69424180..69424261,69438158..69438272,69493082..69493217,69515745..69515919,69517758..69517842,69521435..69521622 |
Genome context |
|
Sequence |
000001 GGCTGGTGAA TTACCAGATC TCCGTCAAGT GCAGTAACCA GTTCAAGTTG GAAGTGTGTC TTTTGAATGC AGAAAACAAA 000080
000081 GTCGTGGACA ACCAGGCTGG GACCCAGGGC CAGCTGAAGG TGCTGGGTGC CAACCTCTGG TGGCCGTACC TGATGCACGA 000160 000161 ACACCCCGCC TACCTGTACT CGTGGGAGGA TGGTGATTGC TCACACCAAA GCCTTGGACC CCTCCCAGCC TGTGACCTTT 000240 000241 GTGACCAACT CCACCTACGC AGCAGACAAG GGGGCTCTGT ATGTGGATGT GATCCGTGTG AACAGCTACT ACTCTTGGTA 000320 000321 TCGCAACTAC GGGCACCTGG AGTTGATTCA GCTGCAGCTG GCCGCCCAGT TTGAGAATTG GTGTAAGACA TCACAATCCC 000400 000401 ATTATTCAGA GCGCGTATGG AGTGGAAACG CTTGTAGGGT TTCACCAGGA TCCACCTCTG ATGTTCAGTG AAGAGGACCG 000480 000481 GAAAAGTCTG CTAGAGCAGT ACCATCTGGG TCTGGATCAA AAACGCAGAA AATACGTGGT TGGAGAGCTC ATCTGGAATT 000560 000561 TTGCCGATTT CATGACTAAC CAGTGTGTCA GTTTCTTGGT CGGGAATGAA AATAGTGCCA ACCTGTGATA CCTTCACTCT 000640 000641 AATTTTACTT TCTGAGGAAG TTTTCTGTAA TAGTTATTTG GTGATAATTA TTAATACTGA TGTGAATTTC TTCGGAGTAA 000720 000721 GAAATCCTCA GAGGAAATTA CCCAGTATAT TCAAAGCTAC AAGGGATTTG TTGACATAAC GGTCTGTTTT CAAGGTCAGT 000800 000801 TTCCGGAAAC AGTGACCCTG AGAAGGCTTC CTCCTGAGTA TGCATAAACA TTCACAGCTT GCATGCGTGT GTGTGTGTGT 000880 000881 GTGTGTGTGT GTGTGTGTGT GTGTATGTTT GCTTGCACTG CATAAAAACA ATTGCAACAT CAACAGAAAT AAAAATTAAA 000960 000961 GGAATAATTC TCCTCCGACT CTGCCGTTCC ATCCAGTGAA ACTCTTCATT CTGGGG |
Predicted Small Protein
Name | NONHSAT101961_smProtein_152:373 |
Length | 74 |
Molecular weight | 7831.7538 |
Aromaticity | 0.041095890411 |
Instability index | 77.7904109589 |
Isoelectric point | 4.97308349609 |
Runs | 11 |
Runs residual | 0.00653999116217 |
Runs probability | 0.0416084533732 |
Amino acid sequence | MHEHPAYLYSWEDGDCSHQSLGPLPACDLCDQLHLRSRQGGSVCGCDPCEQLLLLVSQLR APGVDSAAAGRPV |
Secondary structure | LLLLLLEEEELLLLLLLLLLLLLLLLLLHHHHHLHHHLLLLLEELLLHHHHHHHHHHHHH LLLLLLLLLLLLL |
PRMN | - |
PiMo | - |