NONHSAT102329
Revision as of 01:22, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT102329 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
570 nt |
Genomic location |
chr5-:77784635..77787129 |
Exon number |
2 |
Exons |
77784635..77784976,77786902..77787129 |
Genome context |
|
Sequence |
000001 ATAGAGAGGG CCGTGGGGTT AGAAAGACTT CCTTGTGAAT CACCCCTCTT CAAACAATGA GCATCTGAAT TGATTCCCTC 000080
000081 TACTCCACCC CTGCTACAAA GTCCCTTGAG GCCATCTGAG AAGAACAATG GGATGGGGTG GAGACACTGA AATCCCAAAA 000160 000161 TGCCCTGGTA GTGACATGCC AAGCTGGACA CCATCACAGG ATGAAGACCA CTGTGAAAGT TGTGATGTGT CTATTCCTTA 000240 000241 TCCTCGGTTT GATACTCTAC CCTGCTGGCT GGGGTTGCCA GAAGGCCATA GACTACTGTG GACATTATGC ATCTGCCTAC 000320 000321 AAACCTGGAG ACTGCTCCTT GGGCTGGGCC TTTTATACCG CCATTGGGGG CACAGTCCTC ACTTTCATCT GTGCTGTCTT 000400 000401 CTCTGCACAA GCAGAAATTG CAACCTCTAG TGACAAAGTA CAGGAAGAAA TTGAAGAGGG GAAAAATCTG ATCTGCCTCC 000480 000481 TTTAGTTTGG AAGAGACAAT GCCATTTTCT CCCTTGAGTA ATCTTGTGAA ACAGTCCACA GTTTCATCAT TTGAGTCAAG 000560 000561 TGGAGAACTA |
Predicted Small Protein
Name | NONHSAT102329_smProtein_200:484 |
Length | 95 |
Molecular weight | 10163.845 |
Aromaticity | 0.117021276596 |
Instability index | 47.1384042553 |
Isoelectric point | 5.12274169922 |
Runs | 15 |
Runs residual | 0.0307585568918 |
Runs probability | 0.0475475475475 |
Amino acid sequence | MKTTVKVVMCLFLILGLILYPAGWGCQKAIDYCGHYASAYKPGDCSLGWAFYTAIGGTVL TFICAVFSAQAEIATSSDKVQEEIEEGKNLICLL |
Secondary structure | LLEEEEEHHHHHHHHHHHEELLLLHHHHHHHHHLLLLLLLLLLLLLLHHHHHHHHLLHHH HHHHHHHHHHHHHHLLLHHHHHHHHHLLLLEEEL |
PRMN | LLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHH HHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooooooooooooooTTTTTTTTTT TTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiii |