NONHSAT102891
Revision as of 01:25, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT102891 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1859 nt |
Genomic location |
chr5+:95768987..95770845 |
Exon number |
1 |
Exons |
95768987..95770845 |
Genome context |
|
Sequence |
000001 AGTGTTTACA CGTCAAATCG ACGAAAGCCA TCTCTTGACG TCAGATCTAC CTGGACTAAG ATCCGAATGG TATTCCCGGC 000080
000081 GGGGCGGAGA AGCGGCTAAA ATAAGCAGCC AGGGATTAGG AAAAGGAAGG AACTGTTTGC TGGGATCAGT TAAGTCTGCT 000160 000161 CCTTGTCTGC CCATAAATTC TGTACCGTGA GAAACATTTT CACTTTTCAA AGAGAAGTGC CCCACTTGAA CATAACTACC 000240 000241 AAGAATCAAA GGCTGGGAGT GCTTTCCCTC CCTTCCATCC ATTTTCTCTG TATTTACTTT ATTATCTCAT GTGTGTGGCG 000320 000321 GGGAGGGGGG GAGGCTATAG GATTCTTATA ATGGCCCTTT GGGCATCAGC ACCTGCTATG AAGAACAAGG CTCTTAGGTC 000400 000401 TTTCAAAGAG AGAGGCTAGG AGAGTAAGGA GAAGAAGGGA AGCTACTACT GTCCCAATTC TGTTCTAAAT TGTCTGAGAA 000480 000481 AATTAGCATG TCTATGTTAA AGCAATACTA TTAAAAATGA ATTTTTAACC ATTCAAGCCA CCTTAGTTTA CAAGTTTACT 000560 000561 TCCCTCCTCC CCTTTGTTTC TCAACCTCAG TAAAACAATA TCAGTAGTTA TACTCCGATA TTGCAAAGCC AGCGCCACCA 000640 000641 CCACCTTTTA GGGTGTTTAT CAGTAAAATG ATTAATCATG TGATTTTAAA AAAACATATT TTTAAGAATT CGTCAACAAG 000720 000721 GGGATCTAGG ATCCCAAAAG CTGTTGTGTT GATTCAGGGA GGGAAAGAGC AGTTTTTATT TACCTCGACT TTCCATTGTG 000800 000801 CCTCAGTAGA GCTCTTCACT TTGGTGCTGA GCTGGAGCTG TGCCATTACT TTCCCATAAA ATGCACAATG CCTCTTTGTG 000880 000881 GAAAAATGGT TTCCTGTGGG AGGAGAGCAA GGAAACATCT AAATGAATTC TCCACCCCTC ACCCTAGGGA AGTGAGTTCA 000960 000961 GTCTCCCATG GTGGAGCCTA TTCGAACCCT GAGGGATTGA ACCTGGCGGG AGATACCAGT GCCTAGTATT CAGCACCGAG 001040 001041 GTCTGGACAG CGACACACGC AGGACTGCCG CAGGAGCTGC TCTCTCTTCT GAGCACCAAA GACCTCCACC CTTCTGCAGC 001120 001121 TGGCCAGCAC CAAGCTGTTT TCCTTTTGAT ATGTGCATTT CCCTCTTTTG AACAGCAAAA TAGGAAATTG GCCGCAGGGG 001200 001201 GGAGTGTGGT TAGGTTCATG ATCGTGACAA CTTGTGTCCA GCTCTTGGGA ACGTGTTGGA CTCAGGCCAA AAGTAAAATC 001280 001281 GCCGGGAGGT GGAATTGAGA GAGTATGCTG CACCTGGGAA GTttgttttt ttttttgttg ttgttgttgt tgttTTTTAA 001360 001361 AGCTCAACCG CCCGAGGGCG CGATCTATGC TGTAGAAATA GAAGAAAGGG GAGAAGGTTG GAAAGAAAGC ATATAAACAA 001440 001441 GTGGAGAAAG GAAGCAAGAG ATGTTCCTTA CAAGAAGCAA ATGAGACAAG ACTTGGTGGA GGATCAGGCT CTGTAGTGCT 001520 001521 AATTTTTCAT TTGCCTCCAC GTTTGCAGAA ATGTGCACTA CATAATTTCT TTAAACATAA AGCATCTTTA CAAAATCAAA 001600 001601 TGCCAATGTT AATAAGCCAT GTGACATGGT TAAGTGTTTT ACAATAATGT AACTCACATG AGATGAAATG GAATGGGCTC 001680 001681 CGATTGATAG CTTTGTTGTC TGTTCTGTAA ATCCACATGT GTGAATGTTG ATGGCTGGGT AAGCTGTCTT CTTTTCCCTT 001760 001761 CACACCTCGG CCTGAGTTGT GGCCTCAAGC TCTCAAGGGT GTTTCATTCT CACAGCAGAC AGACACTAAC TGTGCACTAG 001840 001841 CAAGGCAAGA GAAGCCCAG |
Predicted Small Protein
Name | NONHSAT102891_smProtein_1304:1435 |
Length | 44 |
Molecular weight | 4953.7923 |
Aromaticity | 0.162790697674 |
Instability index | 48.7046511628 |
Isoelectric point | 4.75042724609 |
Runs | 6 |
Runs residual | 0.0177684870656 |
Runs probability | 0.0511540952717 |
Amino acid sequence | MLHLGSLFFFLLLLLLFFKAQPPEGAIYAVEIEERGEGWKESI |
Secondary structure | LLLHHHHHHHHHHHHHHHHLLLLLLLEEEEEEHHHLLLLLLLL |
PRMN | LHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | i?????????????????????????????????????????? |