NONHSAT102912

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT102912

Source

NONCODE4.0

Same with

,

Classification

overlapping(AS),sense

Length

2245 nt

Genomic location

chr5-:96149731..96271513

Exon number

4

Exons

96149731..96150013,96158640..96158820,96208989..96209081,96269826..96271513

Genome context

Sequence
000001 ACTCAACAAA TGTGGAGCCC TACTGCGACC CGCCCGATCC CGGACGCCGA GACACCCGCA CTGCGCCAGA AAATCATGGT 000080
000081 CCCAGTCCCA GGAGCGGACA TTCCAGAAAC AGACCATAAA TAAACACAGA AGACACACGA GTGTAAAGTC AGTGCCCCGC 000160
000161 TGCGAATTAA ATCGGGGTGA TGTGATGGCG AGTGAGTGGG TAGTTAATTC GGATGGCTTG GTTAGACGAG GCCTCGCTGA 000240
000241 GCAGGTGCCA CTGAAGCCGA AGTCTGAAGG CAGAGCAGGA ACCTGCGGGC GAAGGTCGCT ATCTGAACCG CGAATCGCTG 000320
000321 GTTTCCCTGG GGAGGTTGGC CGCGGAGGGA TCACTGCTCG AAGGACCGAG GGAGCGGGCG CTGTAGGTGT TTTCGGCAGA 000400
000401 GATGCCCGCC CGCATCAGAG TGCCTCAGGA GGGCGGTGAG GAGGAGACGG AAGAGAGGGC GGGGACCTCG CAGGGCCGAG 000480
000481 GGCGCCCTGG GGTCCAGTCC CGGGGCTGGC GGCTGCCTTG CGGCCTCTAG GTGCGGGCGG ATAACAAAAC CCGGCGCCGG 000560
000561 ATCGCCCGGC CCGGGTCGCG GGCGCCGCAG GATGTGGGCA GAAGGCCCGC CTGTTCCGAG CCTTAAATCA ACACCTGCGG 000640
000641 TTCCCGGGGG TGCTACCACT GGGGCCCGCA GCAAGGCTCC GCGGCGCTAG GCCCGAGAAA CCGAAACTCC CCTAGTCGCC 000720
000721 CCTGCCCCCC AGCACTCGCG CCATTGCCTC CAGCCCCGAG CCACCATTGT TTCCAGTGCC AAATCGGGCA GCCCCGCTAG 000800
000801 CCTCCGAGGC CGAACCGCCA GGGGCCCCAT AAGCCCCGAG GAGGCTCGTC GGGAACCGCT TCCTTATCCT CTCGGTATGC 000880
000881 GCATCGCCAC CACCCTCGCT GCAGAGGCCG CCGCCCTCCC AGCGCGCCAT CACCGCCTCC TCTGCCTCTT CCCCTCCCTC 000960
000961 AGCCCCGGCC CCTGCATTGA CTTGGCTCGG GCTGCGCCTC ACTGCGCCTG CCAACTGTCA CACGCTCTGA GGCTTTCAAC 001040
001041 AGCGGGGCGC CAGGGACAAA CAAGCCGCGG CAAGCGCAAA CAGCCTGCTC AAACAGGGAC GGCCAGGGTG TTGTTTGACC 001120
001121 AGCACTGGAA TTGGAAACTA GGTTTCGAAG AAGTCAAATC GAAGTACAAT ATTGTATTTT AAACTGCCTG TTGTTATTAC 001200
001201 ATCCCTCACA ACGCACGCTC TACTTGAAAC TTCCAGTGGA TACCAACTGC ACTTAGAATA AAAAATGAAA CTCCTTGCCT 001280
001281 AACTCTGGGA CCTCATCAGC ACATACTCAC CATATTTTGG TAACAAAGGC CTTCATGCTG TTCCCGGAAG TCGCCAAGTT 001360
001361 CCATCCATCA TTGTTAATAA TTCCTTTTGC TCGCTCCTCG CACAAGAACT GTTTCTTCTG CTTAGTGCTT TGCCTACTGA 001440
001441 TTCCATCTTG TCATTTAAGT CTCGGCTCAA ATGTCACCTC TGCAAAGAAC CCTTGTCTGA CCATACATCT AAAATAGCCA 001520
001521 CAAACACTCT ATAAAGACTT GGCCTTGCTT TATTTCCTTC TCAGCACTCA TCACTGTCTG AAACAATGTT TTGGATTTGT 001600
001601 TGCTTATTAT CAGTCTCCCT TCTCAAGAAT GCAAGCTTTG TGAGGGCAGA GTCGTAATCT TTTTTAAGGC TGTATCCCCA 001680
001681 ATGCCTGGAT TATCAACTTC GGGCAATGGA CCACGCACCA GGATTCCACC TCTTTCTAGC ACCTATCAGT GTTGCGCACA 001760
001761 TCATAGGCCC TCAACAAACA GGCAGCCACG CTGGGGGATC CCACATGGTA AAGAACTGCA GGTGGCCTCT AGGAGATGAG 001840
001841 GGCGGCCTCC AGTCAACAGC CAGCAAGAAA CTGAAGTGCT CTGTCCTACA ACCTTGTGTA ACTGAATTCT GCCAACAACC 001920
001921 TGAGTGAGAC TGAAAGTGGA TCCCTCTCCA GTCATGCCTC AGTGTGAGAG AAACCTGTGA CTTGCTTCTA ACCCATAGGA 002000
002001 TATGGCAAGG AACTAGTCAT ATCTGAGAGC AGCCTCCAGA AAACAGTCAG CAAAACACTG AGGTTCTCAA TCCGATAGTC 002080
002081 AATGAGGAAC GGAATGCTGG AACAATGATG TGAGCTTGGA AGCAGATCCT TCCCTTCTGC TGGGCCTCAG GTGAGACTGC 002160
002161 AGCTCCAGTC ATCATCTTGA TTGCAGCCCA CAGAAACTAC CAACCCACAG AAACTGTGAG TTAATAAATG TGTTGTTTTA 002240
002241 AGTTG
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Predicted Small Protein

Name NONHSAT102912_smProtein_1334:1516
Length 61
Molecular weight 6652.0156
Aromaticity 0.0833333333333
Instability index 56.1166666667
Isoelectric point 9.04034423828
Runs 10
Runs residual 0.0169326241135
Runs probability 0.043879173291
Amino acid sequence MLFPEVAKFHPSLLIIPFARSSHKNCFFCLVLCLLIPSCHLSLGSNVTSAKNPCLTIHLK
Secondary structure LLLHHHHHLLLLLEEEELLLLLLLLHHHHHHHHEELLLLLLLLLLLLLLLLLLEEEEEEL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLL
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