NONHSAT102912
Revision as of 01:25, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT102912 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
overlapping(AS),sense |
Length |
2245 nt |
Genomic location |
chr5-:96149731..96271513 |
Exon number |
4 |
Exons |
96149731..96150013,96158640..96158820,96208989..96209081,96269826..96271513 |
Genome context |
|
Sequence |
000001 ACTCAACAAA TGTGGAGCCC TACTGCGACC CGCCCGATCC CGGACGCCGA GACACCCGCA CTGCGCCAGA AAATCATGGT 000080
000081 CCCAGTCCCA GGAGCGGACA TTCCAGAAAC AGACCATAAA TAAACACAGA AGACACACGA GTGTAAAGTC AGTGCCCCGC 000160 000161 TGCGAATTAA ATCGGGGTGA TGTGATGGCG AGTGAGTGGG TAGTTAATTC GGATGGCTTG GTTAGACGAG GCCTCGCTGA 000240 000241 GCAGGTGCCA CTGAAGCCGA AGTCTGAAGG CAGAGCAGGA ACCTGCGGGC GAAGGTCGCT ATCTGAACCG CGAATCGCTG 000320 000321 GTTTCCCTGG GGAGGTTGGC CGCGGAGGGA TCACTGCTCG AAGGACCGAG GGAGCGGGCG CTGTAGGTGT TTTCGGCAGA 000400 000401 GATGCCCGCC CGCATCAGAG TGCCTCAGGA GGGCGGTGAG GAGGAGACGG AAGAGAGGGC GGGGACCTCG CAGGGCCGAG 000480 000481 GGCGCCCTGG GGTCCAGTCC CGGGGCTGGC GGCTGCCTTG CGGCCTCTAG GTGCGGGCGG ATAACAAAAC CCGGCGCCGG 000560 000561 ATCGCCCGGC CCGGGTCGCG GGCGCCGCAG GATGTGGGCA GAAGGCCCGC CTGTTCCGAG CCTTAAATCA ACACCTGCGG 000640 000641 TTCCCGGGGG TGCTACCACT GGGGCCCGCA GCAAGGCTCC GCGGCGCTAG GCCCGAGAAA CCGAAACTCC CCTAGTCGCC 000720 000721 CCTGCCCCCC AGCACTCGCG CCATTGCCTC CAGCCCCGAG CCACCATTGT TTCCAGTGCC AAATCGGGCA GCCCCGCTAG 000800 000801 CCTCCGAGGC CGAACCGCCA GGGGCCCCAT AAGCCCCGAG GAGGCTCGTC GGGAACCGCT TCCTTATCCT CTCGGTATGC 000880 000881 GCATCGCCAC CACCCTCGCT GCAGAGGCCG CCGCCCTCCC AGCGCGCCAT CACCGCCTCC TCTGCCTCTT CCCCTCCCTC 000960 000961 AGCCCCGGCC CCTGCATTGA CTTGGCTCGG GCTGCGCCTC ACTGCGCCTG CCAACTGTCA CACGCTCTGA GGCTTTCAAC 001040 001041 AGCGGGGCGC CAGGGACAAA CAAGCCGCGG CAAGCGCAAA CAGCCTGCTC AAACAGGGAC GGCCAGGGTG TTGTTTGACC 001120 001121 AGCACTGGAA TTGGAAACTA GGTTTCGAAG AAGTCAAATC GAAGTACAAT ATTGTATTTT AAACTGCCTG TTGTTATTAC 001200 001201 ATCCCTCACA ACGCACGCTC TACTTGAAAC TTCCAGTGGA TACCAACTGC ACTTAGAATA AAAAATGAAA CTCCTTGCCT 001280 001281 AACTCTGGGA CCTCATCAGC ACATACTCAC CATATTTTGG TAACAAAGGC CTTCATGCTG TTCCCGGAAG TCGCCAAGTT 001360 001361 CCATCCATCA TTGTTAATAA TTCCTTTTGC TCGCTCCTCG CACAAGAACT GTTTCTTCTG CTTAGTGCTT TGCCTACTGA 001440 001441 TTCCATCTTG TCATTTAAGT CTCGGCTCAA ATGTCACCTC TGCAAAGAAC CCTTGTCTGA CCATACATCT AAAATAGCCA 001520 001521 CAAACACTCT ATAAAGACTT GGCCTTGCTT TATTTCCTTC TCAGCACTCA TCACTGTCTG AAACAATGTT TTGGATTTGT 001600 001601 TGCTTATTAT CAGTCTCCCT TCTCAAGAAT GCAAGCTTTG TGAGGGCAGA GTCGTAATCT TTTTTAAGGC TGTATCCCCA 001680 001681 ATGCCTGGAT TATCAACTTC GGGCAATGGA CCACGCACCA GGATTCCACC TCTTTCTAGC ACCTATCAGT GTTGCGCACA 001760 001761 TCATAGGCCC TCAACAAACA GGCAGCCACG CTGGGGGATC CCACATGGTA AAGAACTGCA GGTGGCCTCT AGGAGATGAG 001840 001841 GGCGGCCTCC AGTCAACAGC CAGCAAGAAA CTGAAGTGCT CTGTCCTACA ACCTTGTGTA ACTGAATTCT GCCAACAACC 001920 001921 TGAGTGAGAC TGAAAGTGGA TCCCTCTCCA GTCATGCCTC AGTGTGAGAG AAACCTGTGA CTTGCTTCTA ACCCATAGGA 002000 002001 TATGGCAAGG AACTAGTCAT ATCTGAGAGC AGCCTCCAGA AAACAGTCAG CAAAACACTG AGGTTCTCAA TCCGATAGTC 002080 002081 AATGAGGAAC GGAATGCTGG AACAATGATG TGAGCTTGGA AGCAGATCCT TCCCTTCTGC TGGGCCTCAG GTGAGACTGC 002160 002161 AGCTCCAGTC ATCATCTTGA TTGCAGCCCA CAGAAACTAC CAACCCACAG AAACTGTGAG TTAATAAATG TGTTGTTTTA 002240 002241 AGTTG |
Predicted Small Protein
Name | NONHSAT102912_smProtein_1334:1516 |
Length | 61 |
Molecular weight | 6652.0156 |
Aromaticity | 0.0833333333333 |
Instability index | 56.1166666667 |
Isoelectric point | 9.04034423828 |
Runs | 10 |
Runs residual | 0.0169326241135 |
Runs probability | 0.043879173291 |
Amino acid sequence | MLFPEVAKFHPSLLIIPFARSSHKNCFFCLVLCLLIPSCHLSLGSNVTSAKNPCLTIHLK |
Secondary structure | LLLHHHHHLLLLLEEEELLLLLLLLHHHHHHHHEELLLLLLLLLLLLLLLLLLEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooooo |