NONHSAT103724
Revision as of 01:28, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT103724 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1454 nt |
Genomic location |
chr5-:131525841..131527202 |
Exon number |
1 |
Exons |
131525841..131527202 |
Genome context |
|
Sequence |
000001 GACGGAGTCT CGCTCTGTCG CCCAGGCTGG AGTGCAGTGG CGGGATCTCG GCTCACTGCA AGCTCCGCCT CCCGGGTTCA 000080
000081 CGCCATTCTC CTGCCTCAGC CTCCCAAGTA GCTGGGACTA CAGGCGCCCG CCACTACGCC CGGCTAATTT TTTGTATTTT 000160 000161 TAGTAGAGAC GGGGTTTCAC CGTTTTAGCC GGGATGGTCT CGATCTCCTG ACCTCGTGAT CCGCCCGCCT CGGCCTCCCA 000240 000241 AAGTGCTGGG ATTACAGGCG TGAGCCACCG CGCCCGGCCC ATATGTTGAA ATCTTAACCC CCAATGTGAT GATATTAGGA 000320 000321 TGCGGAGCCC TTGGGAGGTC GTAAGCATGG AGCCCACGTG AGTGGGATTA GTGCCCTTAT GAAGAGATCC CAGCCCTCTT 000400 000401 TCTGCCATGC GAACACACAG CAAGAAGATG CCTGTCTATG AACCAGGGGG CCCTTACCAG AAACAAACCT ACTAGCATCT 000480 000481 TGATCTCGGA CTTTCCAGTT CCCATAACCA TGAGAAATAA ATGTTTTTAA TTCAATGTAT GGTATTTTAT TATAGCAGCT 000560 000561 CTACCTAAGA CAGTACATGT ATAGTGTCTA TTTGAACATT ACTGATAATG TTGAACAACT TTTCATGTTT ATTAGTTATT 000640 000641 AGGTTTCTTC AAGTGTTCTT ATTCATACAA ATTTTAAAAT ATGTACACAA GTTCTTTGTT ATATATTTTG CAAATATCTT 000720 000721 CTGTGGCTTG TCTTTTCACT ATTTTAGTTC TGTCTTTTGA TAAACAGGAG CTTTTAATTT TTATGTCAAA TCTATCAAGC 000800 000801 TTTTTCTTTT TGATTTATGT TTTTTATGTC TTATTTGAGA AATCCTTCTA TACCCCAAGA TCATGAGGAT GTTTCCTGTG 000880 000881 TTCTCTTCTG AAAGCTATAT AGTCTTTGTC ATTTAGGTTT ATCTTTATAC GTGGTATGAA GTGTAAAGTT CTACTTTTAA 000960 000961 TTTTTTGCAT ATTTTATTAG GATAGGATGG GCTTTTTCTG TAGTAATAAT CCCTAAATCT CAGGGGCTTA ATATATAAAA 001040 001041 TTGTCTCATG CAAAAAACCA CTGGGTCTAG GGCAATTGCT ATCTACTGCC GTCTAATCTC CCTCTAGTGG CTTCCATTGG 001120 001121 TAGACCCTAA CAGGAAGCCA GCTGATAAGG GAATCTGGGA AATGTAGTTT ACAGAGTGGC AGCTACAGTA GAACAGTAGA 001200 001201 GACTACAAGG ATGAGCTTGC AGCTGAGAAT AGAAACGTGA CTGGCACACT AGGTGGTTTG TTTGTAGGTT TTTTTCTTTT 001280 001281 CCTGTTTGAG ACTTTTTTGG ATTCTTGAAT TTGTACAATG GTATCCTTAA TCAATTGTGG AAAATTAAAT GATTTTTTCT 001360 001361 TTCTAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 001440 001441 AAAAAAAAAA AAAA |
Predicted Small Protein
Name | NONHSAT103724_smProtein_680:865 |
Length | 62 |
Molecular weight | 7229.5105 |
Aromaticity | 0.229508196721 |
Instability index | 73.9495081967 |
Isoelectric point | 5.93389892578 |
Runs | 11 |
Runs residual | 0.0275108347466 |
Runs probability | 0.0189735189735 |
Amino acid sequence | MYTSSLLYILQISSVACLFTILVLSFDKQELLIFMSNLSSFFFLIYVFYVLFEKSFYTPR S |
Secondary structure | LLLHHHHHHHHHHHHHHHHHHHEELLLHHHHHHHHHHHHHHHHEEEEEEELEELEEELLL L |
PRMN | LLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLL L |
PiMo | ooooooooTTTTTTTTTTTTTTTTTTiiiiiiTTTTTTTTTTTTTTTTTToooooooooo o |