NONHSAT104944
Revision as of 01:34, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT104944 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1095 nt |
Genomic location |
chr5+:164400248..164557239 |
Exon number |
3 |
Exons |
164400248..164400569,164434375..164434418,164556511..164557239 |
Genome context |
|
Sequence |
000001 ccagaagtcc aactgttaaa aaacttttac cctttacctg gcatgtcagg cttttggatt cctttcccct gagctcaatt 000080
000081 ttaagcccag cagtttaagg ttggggaagt taacttttcc aatttggggg atacatctaa tgggattgtc ctgtggtaca 000160 000161 ggaacacaaa tacccatcgg tgaagagagg acagaggagg aaaaaggaga aagaaggttt ttttgtttgt ttgttttatt 000240 000241 ttcaaaggaa tcccagtgat tcaagatgca ttggagagaa atacagactg aagataattg gttacccatc tagaaagagg 000320 000321 taATATATGA AGTCTGGGGG TAAGACCTGC AGTAATTTCC CTTAAGTCTC AATAAATTAG GTTAAAAGAG TACCCACTTA 000400 000401 TTACATTATC TCAAGTTAAT CTCTATTACA AGATCCTCCA AAGAGAAAAA GTATCATCTT TTTGAATTCT GGAGAAATCC 000480 000481 AGCCAATTCA GTCTTCTCAG CCAAGATGGA AGCCCTCCCT CTTCCTTTCA ATTCAGTGGA GTCTCAGATC CGCAAGTATG 000560 000561 ATCTACTACC ATGGTGTCTG GGAAAGAGGT GCTGGTTCCT TGGTGGTCAT AGTCTGCTCT GATTCCTCCG CTCTATCTGC 000640 000641 ATCCCTGTCT AATGCGATGG CGTTTCCGTC TCCAGTTACT GATCGTGGAG CCTCTCCAGG ACTACAGGCT CTTCCTCAGC 000720 000721 GGCTGCCAAG CTCCTCTTAG GGAAGCCGGG GAACTTCTGA ATGCCCAAGT ATACCCTGCT GGAGGCACAG GAATCCTCTT 000800 000801 GGAAGCTTTG TCTGGACATG CTTTAATACC GTCCATTTCT ACTGTTGCCA TACCAAGCCG CTACTGGTCA CCACTGTAAA 000880 000881 TCTTTCTGCT GTTTTTTATA ACCACAAAGT ATAGCACAAT TTCTGTCTGC TTTCATGCAC CTAAAACTAT TGTGGTTTTT 000960 000961 GCCTTTCCCG GTCTCATTAG CTAAAACAAA GAGTTGATAA AGGCACAGGC CCTTTCTCAA GAAACAAAAT GTTGTCTGTC 001040 001041 TTCTTTCTGc agtgaaacag aatgtaaagt ccagaaataa acgtgtaatt aaata |
Predicted Small Protein
Name | NONHSAT104944_smProtein_557:739 |
Length | 61 |
Molecular weight | 6193.9516 |
Aromaticity | 0.0666666666667 |
Instability index | 59.9183333333 |
Isoelectric point | 6.50555419922 |
Runs | 9 |
Runs residual | 0.000265957446809 |
Runs probability | 0.0413158256296 |
Amino acid sequence | MIYYHGVWERGAGSLVVIVCSDSSALSASLSNAMAFPSPVTDRGASPGLQALPQRLPSSS |
Secondary structure | LEEEEEEEELLLLEEEEEEELLLHHHHHLHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |