NONHSAT105154

From LncRNAWiki
Revision as of 01:35, 17 October 2014 by 124.16.129.48 (talk)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT105154

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1593 nt

Genomic location

chr5-:172381786..172386371

Exon number

4

Exons

172381786..172383031,172384157..172384305,172385142..172385260,172386293..172386371

Genome context

Sequence
000001 CGAAGTCGAA TGGCGCCCCC AGCGGCTTGG GGTGGGATCT CAGTGCCTCA TTCCTGGCGG CCCCGGGAGG GCGATGCCAA 000080
000081 GTTTCGCTCT TGTTCCCTGG GCTGCAGTGC AGTGGCACCA TCTCGGCTCA CCGCAACCTC CGCCTCCCAA GTTCAAGCGA 000160
000161 TTCTCCTGCC TCAGCCTCCC CAGTATCTGG GATTACAGTA AAATTAAAAC AGGCACAATG ATATCCTGGA TGACAAGAGC 000240
000241 TGGAGGCTGT CATTCTAACA ATGTAGTGAG ACTGGCTGTC TTGTCTCATG CCCACCCCTG GAAACATGCG CAGGAACTCA 000320
000321 AAGCACCTAG CACAGAGGAA GTGTCTGGTT GTTTTAAAGG AAAAACAAAA CCAAAAAAAG CACCTCCTGC TCTGACCACC 000400
000401 CCTATTTCCA GTTTTCCCTT TTGGCACAGC AAAGATGACC TTGGGACTGA GGTGGAACCA TGTAATTCTT CGTAATCCCA 000480
000481 GAGTCAGGCA GACCTGGGTA TGAATTCCAT CTTTACTAAC TGTGTGACTC ACTGTGTGGC CATGCCAAGT TACGAGGTCT 000560
000561 CTCTGTTTCC TCCTTCCTAA AAAGGAGATA ACATCCATCT CGAAGGAAGA TCTGGCCTGA AGAGCAGTCA CTCTTGCCTG 000640
000641 GCATGCAGAG AATGCCAAAT CATATTAATG ACTGGCCAGA ATGAAGTGCG TGACCTCATC ACTCCATAAC TGACAGGAAA 000720
000721 CAACTGCTAG GGCAAGAAAA AAGGGTCTCC AGTGAGTATT CTTGTCCACA CACATCCCCA CTCACGTTCC TGGACCACTG 000800
000801 CATCTAACTG CCGCAGCAGC TAATGAACCT TCTGGAATAA AGGACCAGTT TCTTAAGAAG GGATTGAGAC CTCCAGTGGC 000880
000881 CTCCCACATT GTTTCCGGCA AGAATTTAAA AATTATTTGT AACATATAGT AATAAAAACT AACCACAGGC TGGGCGCAGT 000960
000961 GGCTCACGCC TGTAATCCCA GCACTTTGGG AGGCTGAGGC AGGTGGATCA CCTGAGGTCA GGAGTTCGAG ACCAGCCTGA 001040
001041 CCAATATGGT GAAACCCTGT TTCTCCTAAA AATACAAAAA TTAGCTGGGC ATGGTGGTGG GCGCCTGTAA TCTCAGCTAC 001120
001121 TCAGGAGGCT GAAACAGGAG AACTGCTTGA ATCTGGGAGG TAGATGTTGC AGTGAGCCGA TATCGCGCCA TTGCACTCCA 001200
001201 GCCTGGGCAA TGACTCCGTC TCAAAAAAAA AAAAAAAAAA AAAAAACTAA CCACAGCTAC TATTTATGAA CTCTAGTGCC 001280
001281 ACACCCCATT TCTTCCCAGG TTTCACCCCC TCTTCCCAGG TTTCACCCAC CCCAACCAGT GTTGTTTGCA ACACTTCAGC 001360
001361 TTCTCTCCTC ACGAAGCACG TCTCCAGAGA CGCCTCTTCC GCAACTTCCC AGGGAAGCCA TTTCTGCCTG GACCCACCAC 001440
001441 AGCTCCCAAC CTGTCACGCA CCCCTGGAGG GTTTTGCTCT GTAATCCTGA TTTAGAAATC CTCTTATATG AAACCACTGT 001520
001521 AATCCACATC TGGTTAGACA ATTGGAAAAG TTCATTGAAA GGAGAAATAA TAAAAATGGC ATCCATCCCT TAA
[back to top]

Predicted Small Protein

Name NONHSAT105154_smProtein_1265:1483
Length 73
Molecular weight 7487.2696
Aromaticity 0.0694444444444
Instability index 50.1597222222
Isoelectric point 6.36297607422
Runs 7
Runs residual 0.0436942416869
Runs probability 0.0280490574609
Amino acid sequence MNSSATPHFFPGFTPSSQVSPTPTSVVCNTSASLLTKHVSRDASSATSQGSHFCLDPPQL
PTCHAPLEGFAL
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLLEEEELLLHHHHHLLLLLLLLLLLLLLLEEEELLLLL
LLLLLLLLLLLL
PRMN -
PiMo -