NONHSAT105154
Revision as of 01:35, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT105154 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1593 nt |
Genomic location |
chr5-:172381786..172386371 |
Exon number |
4 |
Exons |
172381786..172383031,172384157..172384305,172385142..172385260,172386293..172386371 |
Genome context |
|
Sequence |
000001 CGAAGTCGAA TGGCGCCCCC AGCGGCTTGG GGTGGGATCT CAGTGCCTCA TTCCTGGCGG CCCCGGGAGG GCGATGCCAA 000080
000081 GTTTCGCTCT TGTTCCCTGG GCTGCAGTGC AGTGGCACCA TCTCGGCTCA CCGCAACCTC CGCCTCCCAA GTTCAAGCGA 000160 000161 TTCTCCTGCC TCAGCCTCCC CAGTATCTGG GATTACAGTA AAATTAAAAC AGGCACAATG ATATCCTGGA TGACAAGAGC 000240 000241 TGGAGGCTGT CATTCTAACA ATGTAGTGAG ACTGGCTGTC TTGTCTCATG CCCACCCCTG GAAACATGCG CAGGAACTCA 000320 000321 AAGCACCTAG CACAGAGGAA GTGTCTGGTT GTTTTAAAGG AAAAACAAAA CCAAAAAAAG CACCTCCTGC TCTGACCACC 000400 000401 CCTATTTCCA GTTTTCCCTT TTGGCACAGC AAAGATGACC TTGGGACTGA GGTGGAACCA TGTAATTCTT CGTAATCCCA 000480 000481 GAGTCAGGCA GACCTGGGTA TGAATTCCAT CTTTACTAAC TGTGTGACTC ACTGTGTGGC CATGCCAAGT TACGAGGTCT 000560 000561 CTCTGTTTCC TCCTTCCTAA AAAGGAGATA ACATCCATCT CGAAGGAAGA TCTGGCCTGA AGAGCAGTCA CTCTTGCCTG 000640 000641 GCATGCAGAG AATGCCAAAT CATATTAATG ACTGGCCAGA ATGAAGTGCG TGACCTCATC ACTCCATAAC TGACAGGAAA 000720 000721 CAACTGCTAG GGCAAGAAAA AAGGGTCTCC AGTGAGTATT CTTGTCCACA CACATCCCCA CTCACGTTCC TGGACCACTG 000800 000801 CATCTAACTG CCGCAGCAGC TAATGAACCT TCTGGAATAA AGGACCAGTT TCTTAAGAAG GGATTGAGAC CTCCAGTGGC 000880 000881 CTCCCACATT GTTTCCGGCA AGAATTTAAA AATTATTTGT AACATATAGT AATAAAAACT AACCACAGGC TGGGCGCAGT 000960 000961 GGCTCACGCC TGTAATCCCA GCACTTTGGG AGGCTGAGGC AGGTGGATCA CCTGAGGTCA GGAGTTCGAG ACCAGCCTGA 001040 001041 CCAATATGGT GAAACCCTGT TTCTCCTAAA AATACAAAAA TTAGCTGGGC ATGGTGGTGG GCGCCTGTAA TCTCAGCTAC 001120 001121 TCAGGAGGCT GAAACAGGAG AACTGCTTGA ATCTGGGAGG TAGATGTTGC AGTGAGCCGA TATCGCGCCA TTGCACTCCA 001200 001201 GCCTGGGCAA TGACTCCGTC TCAAAAAAAA AAAAAAAAAA AAAAAACTAA CCACAGCTAC TATTTATGAA CTCTAGTGCC 001280 001281 ACACCCCATT TCTTCCCAGG TTTCACCCCC TCTTCCCAGG TTTCACCCAC CCCAACCAGT GTTGTTTGCA ACACTTCAGC 001360 001361 TTCTCTCCTC ACGAAGCACG TCTCCAGAGA CGCCTCTTCC GCAACTTCCC AGGGAAGCCA TTTCTGCCTG GACCCACCAC 001440 001441 AGCTCCCAAC CTGTCACGCA CCCCTGGAGG GTTTTGCTCT GTAATCCTGA TTTAGAAATC CTCTTATATG AAACCACTGT 001520 001521 AATCCACATC TGGTTAGACA ATTGGAAAAG TTCATTGAAA GGAGAAATAA TAAAAATGGC ATCCATCCCT TAA |
Predicted Small Protein
Name | NONHSAT105154_smProtein_1265:1483 |
Length | 73 |
Molecular weight | 7487.2696 |
Aromaticity | 0.0694444444444 |
Instability index | 50.1597222222 |
Isoelectric point | 6.36297607422 |
Runs | 7 |
Runs residual | 0.0436942416869 |
Runs probability | 0.0280490574609 |
Amino acid sequence | MNSSATPHFFPGFTPSSQVSPTPTSVVCNTSASLLTKHVSRDASSATSQGSHFCLDPPQL PTCHAPLEGFAL |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLEEEELLLHHHHHLLLLLLLLLLLLLLLEEEELLLLL LLLLLLLLLLLL |
PRMN | - |
PiMo | - |