NONHSAT105850

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT105850

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1243 nt

Genomic location

chr5+:180336573..180375353

Exon number

3

Exons

180336573..180336697,180338339..180338614,180374512..180375353

Genome context

Sequence
000001 CTTCACAGTG AAATGTATTT GACGGggctg ggtgcagtgg ctcaagcccg taatcccaac accttgagag gctgagacag 000080
000081 gaggattgct tgagtccagg agctcgagac cagcctgggc atatgCACTG GGCTCAGTTC CTCTCATTTC CATCACGGGA 000160
000161 TATGTTGATA GAGACATCCA GCTACTCTGT CAGTCCTCGG GCTGGTTCCC CCGGCCCACA GCGAAGTGGA AAGGTCCACA 000240
000241 AGGACAGGAT TTGTCCACAG ACTCCAGGAC AAACAGAGAC ATGCATGGCC TGTTTGATGT GGAGATCTCT CTGACCGTCC 000320
000321 AAGAGAACGC CGGGAGCATA TCCTGTTCCA TGCGGCATGC TCATCTGAGC CGAGAGGTGG AATCCAGGGT ACAGATAGGA 000400
000401 GATACCTTTT TCGAGCCTAT ATCGTGGCAC CTGGCTACCA AAGTACTGGG AATACTCTGC TGTGGCCTAT TTTTTGGCAT 000480
000481 TGTTGGACTG AAGATTTTCT TCTCCAAATT CCAGTGTAAG CGAGAGAGAG AAGCATGGGC CGGTGCCTTA TTCATGGTTC 000560
000561 CAGCAGGGAC AGGATCAGAG ATGCTCCCAC ATCCAGCTGC TTCTCTTCTT CTAGTCCTAG CCTCCAGGGG CCCAGGCCCA 000640
000641 AAAAAGTAAT CATCCTTCTC TAGGGTATTC TAACATCTCT TCCTCTGGAA ATATCAACTA CGACAGCCCC TTGCTACTTC 000720
000721 ATTTAGGTCA AATAATAAGG GGATGAATGA TTTTCAGTAC CTATAGAGAG AGCTTGGATA ATTTTCCATG AACACCACCA 000800
000801 AGACTCCTAT TAAAAAGTTT TAATGTGGTG AACAAATTCA TAAAGGAGGA AGCAAAAGTG ACTGACAATA AGATAAAATT 000880
000881 ATATTCAGTC TCAATAAGAC TTTTCACCCC CAAAACCAAT TTCCTCCTCC TTGGGAGTGA CACTTCCCCT TGGGGGTGAG 000960
000961 Gccacccccg cctcccctcc cagctgcctt ctcccatctc catccccacc tccacAGCAT CCCAGCTGTT GTCCCTCTCC 001040
001041 TTAGCATGCA CCTTCCTGAT CTCTTGCTCC ACCCCAGAGA GCCACACTCC GTGCAGGAGC TGGGGAGACG AGCACATATA 001120
001121 AGTGTCCTAG GAGAGGCCCT GCCCTTCACA CCTGCAGCTC GTCCCACCTG TGCAAGGAGC CAGCGTCGTG TTTGTGCCTT 001200
001201 GTACACTCCT GTGTCCACCA CTGAATATAC TGTTTCTGTT TCA
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Predicted Small Protein

Name NONHSAT105850_smProtein_122:313
Length 64
Molecular weight 7084.0889
Aromaticity 0.0793650793651
Instability index 90.0587301587
Isoelectric point 9.09820556641
Runs 9
Runs residual 0.00210560414642
Runs probability 0.0477438222537
Amino acid sequence MHWAQFLSFPSRDMLIETSSYSVSPRAGSPGPQRSGKVHKDRICPQTPGQTETCMACLMW
RSL
Secondary structure LLEEEELLLLLLLEEEEELLEEELLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHH
HLL
PRMN -
PiMo -