NONHSAT105850
Revision as of 01:38, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT105850 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1243 nt |
Genomic location |
chr5+:180336573..180375353 |
Exon number |
3 |
Exons |
180336573..180336697,180338339..180338614,180374512..180375353 |
Genome context |
|
Sequence |
000001 CTTCACAGTG AAATGTATTT GACGGggctg ggtgcagtgg ctcaagcccg taatcccaac accttgagag gctgagacag 000080
000081 gaggattgct tgagtccagg agctcgagac cagcctgggc atatgCACTG GGCTCAGTTC CTCTCATTTC CATCACGGGA 000160 000161 TATGTTGATA GAGACATCCA GCTACTCTGT CAGTCCTCGG GCTGGTTCCC CCGGCCCACA GCGAAGTGGA AAGGTCCACA 000240 000241 AGGACAGGAT TTGTCCACAG ACTCCAGGAC AAACAGAGAC ATGCATGGCC TGTTTGATGT GGAGATCTCT CTGACCGTCC 000320 000321 AAGAGAACGC CGGGAGCATA TCCTGTTCCA TGCGGCATGC TCATCTGAGC CGAGAGGTGG AATCCAGGGT ACAGATAGGA 000400 000401 GATACCTTTT TCGAGCCTAT ATCGTGGCAC CTGGCTACCA AAGTACTGGG AATACTCTGC TGTGGCCTAT TTTTTGGCAT 000480 000481 TGTTGGACTG AAGATTTTCT TCTCCAAATT CCAGTGTAAG CGAGAGAGAG AAGCATGGGC CGGTGCCTTA TTCATGGTTC 000560 000561 CAGCAGGGAC AGGATCAGAG ATGCTCCCAC ATCCAGCTGC TTCTCTTCTT CTAGTCCTAG CCTCCAGGGG CCCAGGCCCA 000640 000641 AAAAAGTAAT CATCCTTCTC TAGGGTATTC TAACATCTCT TCCTCTGGAA ATATCAACTA CGACAGCCCC TTGCTACTTC 000720 000721 ATTTAGGTCA AATAATAAGG GGATGAATGA TTTTCAGTAC CTATAGAGAG AGCTTGGATA ATTTTCCATG AACACCACCA 000800 000801 AGACTCCTAT TAAAAAGTTT TAATGTGGTG AACAAATTCA TAAAGGAGGA AGCAAAAGTG ACTGACAATA AGATAAAATT 000880 000881 ATATTCAGTC TCAATAAGAC TTTTCACCCC CAAAACCAAT TTCCTCCTCC TTGGGAGTGA CACTTCCCCT TGGGGGTGAG 000960 000961 Gccacccccg cctcccctcc cagctgcctt ctcccatctc catccccacc tccacAGCAT CCCAGCTGTT GTCCCTCTCC 001040 001041 TTAGCATGCA CCTTCCTGAT CTCTTGCTCC ACCCCAGAGA GCCACACTCC GTGCAGGAGC TGGGGAGACG AGCACATATA 001120 001121 AGTGTCCTAG GAGAGGCCCT GCCCTTCACA CCTGCAGCTC GTCCCACCTG TGCAAGGAGC CAGCGTCGTG TTTGTGCCTT 001200 001201 GTACACTCCT GTGTCCACCA CTGAATATAC TGTTTCTGTT TCA |
Predicted Small Protein
Name | NONHSAT105850_smProtein_122:313 |
Length | 64 |
Molecular weight | 7084.0889 |
Aromaticity | 0.0793650793651 |
Instability index | 90.0587301587 |
Isoelectric point | 9.09820556641 |
Runs | 9 |
Runs residual | 0.00210560414642 |
Runs probability | 0.0477438222537 |
Amino acid sequence | MHWAQFLSFPSRDMLIETSSYSVSPRAGSPGPQRSGKVHKDRICPQTPGQTETCMACLMW RSL |
Secondary structure | LLEEEELLLLLLLEEEEELLEEELLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHH HLL |
PRMN | - |
PiMo | - |