NONHSAT106315
Revision as of 01:38, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT106315 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1577 nt |
Genomic location |
chr6-:997480..1131273 |
Exon number |
3 |
Exons |
997480..998707,1005633..1005763,1131056..1131273 |
Genome context |
|
Sequence |
000001 GTCAGGTTTT TCTCTGTTTA AGTGGCTACA GCTGAATAGC TCAGGCCAAA CTTAAAGCTC ACACTTGAGA CTTGACGTGC 000080
000081 TCAGCTCCTG CTAAAGAGGC TCCAGGGCAG CGCCTGCCTT TCCGGGAAGC TCCCCTGAGG GTCACCGAGG CTGCAGAGAA 000160 000161 CACCCGGTGA TGACTGCATG GATCTCCTTC ATCTGCTGGG ATTCAAGCTG TGTTGCTGGC CCTGCATGTT TTTCTTCGGG 000240 000241 AAGGCTGTGC AGTCTGCTCT GAGGAGACAG ATCAACCTAG CCCTTCTCCA GGACGAACTC CGAAAACCAC AGGAATTCAC 000320 000321 GTTCAAAGGA TGACGCATCT CAGAATCAGG TGGCCTTTAG TGAGCCAGTG GCTCGGATTT ATGTGGTCAG ATTCTGAGCC 000400 000401 GGCAGACACA AGGACAAGCC AGCGAGAGGT GTGGCAGGAC TGGAGATTCT GTGTAGGTCT GTATGTGATG GGCTTTATGA 000480 000481 AATGCATCTA TTTAATGTAC TCCAAGCCAA TTCTAAATGA AGCATGATGC AGCCAAATAT GAAAGGAGCT CATTATTGAT 000560 000561 ACATTttatg gaccgaattg tgttctctgg aaaaggtagt tgaagtccct taatatgtga ccttatttgg aggaatagga 000640 000641 tcttaaagaa gtaatcaagt taaaatcacg tcattcaagt gggctctaat ccaatataac tgatgtcttt attagaaggt 000720 000721 taaatttgaa cagagacaga tgtgcataga gagaaggttg tgtgaagaga cacaggaagg agacggccat ctatttggaa 000800 000801 cagagcttcc cttatagacc tcagaaggaa ccaactctga taccttggtt ttgggcttcc agactccaga actgtgagac 000880 000881 aataaattcc tgttatttaa ggctcaccag tctgcggggc tttgccatgg catcctaaga aaGTGAGCGT GAAACTTAAT 000960 000961 TCATCAGTAC GGAAAACATC TTGGCAGTTT AACCACTATT GTAATACTCA TGTATTGATA CGTGTTTCAG AATTTTTCTG 001040 001041 CTCTCTTCCT CAGTATGTAT GTACAGCAAA AGCTTCAGAG AGAAACTCCA GGCCATGCAA ACTCATGAAC TAAACTCTGG 001120 001121 GAGAGGTGCT GGTGATGACC TGGAAGGGAA AGATGAGTGT TTGGCACAGG ACGGGACCGA CCGAAAGTGG TTGTGTGGGA 001200 001201 GGGTTTGATG GGGTGGCTGC TGGTTGTTGT TGGGAGAGGA GGGGCAGGTG GGTTCTCTCC TCTGGCAAGG CCACGGGTGT 001280 001281 GGTCTGGCTT GGAGCAGGAT CCAGAGCCAT TGAACTCTGA GGAACTATGA AGCTCCTGCT GCAGGTAGGA AAGAAAGAGA 001360 001361 AGGTGAGAAG ATAGGAGGAA GCTTCCCAAT GCCCTAGACA GGTTGCAGGT GAGGGCACAG ACCCCTGTGC AGATGTGCTG 001440 001441 GAGCTGCAGT GCAGTGGGAT GCCCGGGAAC ATGGGGGGCT CCTGACTTAG TGCTGAGATG CCTGGAAGTC AAAGGCACGT 001520 001521 GGAGATGGCG AGCTGCACGA TGAGAAGTGT GATCTCCTCC TTCCAAACTG cagagag |
Predicted Small Protein
Name | NONHSAT106315_smProtein_329:526 |
Length | 66 |
Molecular weight | 7906.1743 |
Aromaticity | 0.169230769231 |
Instability index | 43.18 |
Isoelectric point | 7.80511474609 |
Runs | 10 |
Runs residual | 0.00355769230769 |
Runs probability | 0.0375552022612 |
Amino acid sequence | MTHLRIRWPLVSQWLGFMWSDSEPADTRTSQREVWQDWRFCVGLYVMGFMKCIYLMYSKP ILNEA |
Secondary structure | LLEEEEELLHHHHHHLLEELLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHEEEELLL LLLLL |
PRMN | - |
PiMo | - |