NONHSAT106525
Revision as of 01:39, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT106525 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
overlapping(AS),sense |
Length |
6026 nt |
Genomic location |
chr6-:1585165..1624125 |
Exon number |
4 |
Exons |
1585165..1590367,1592239..1592732,1593901..1594006,1623903..1624125 |
Genome context |
|
Sequence |
000001 AATTATGTTG TTACACAACA AATTGTGGGG CCTTCAAATT GTTTTTCTCT TTTCATATTA AAAATGGTCT TTCTGTGAAC 000080
000081 TAGCATTCAC AGGGTCAGTG TGGATGTTTT CTCCCAAGTT ATGAACACGG CTATAGGGGT CCCCAAACAA CCCCACAATC 000160 000161 CAGGCCTTGG AATGAGATCG CTGTGGTCAG GCCTTGCCCT GTTTTGAGAA AGCCCTTGGT GGGCCAGTGA GGGCAGAAAG 000240 000241 AACACCAGTC AAGCAAGGGA GCACTTCCTT GTCCTACAAC CTCATCCCAG AGTCTATTTT TGTTAAAACT CCAGAAGAAG 000320 000321 GAAGGAAACG GGTAATGGCC CCCAGCTCCA TCCATGTTGC TGCAGAGGAC ATGATTTCAT TCTTTTCTAT GGCTGCATGG 000400 000401 GAAGAAGCTT GTATTTTATT AAAGATTAAG CAAGATCCAT GTTGCTGAGG ATGTTTTGTC TGTGTGTGTG TGTGTGTGTG 000480 000481 TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG GAGAGGGGTA GGTAGAGTAT ACCGGAAGGA AGTAGGACTG TAGATGTTGA 000560 000561 GCTTTTTGTC CTCCAGAATT GAATGTGGGC CACGCTGGTG TTTGTGGAGT TCCATGATGG CTGAGCTGTG ATGACTGATG 000640 000641 TTGCCAGGAG CTTTGTCTGT GTGGACTCGA CCCTCTGCCA TGTTGCCCAG TTCTCCTTGA AGTCAGTGGA AGCTGCATGG 000720 000721 CCTGGCCTGG CGCAGCTGCA GGTGATGCAG CCACTGTTAG GTGAGCCTGG CCTCATTCAG AAATGATCTC CAAAATTCTT 000800 000801 TAGAGAAAAG GGGGAGACTG CTGATTAGGG AAAAATATTT CACGTAAAGG ATCTCTTTCA TGTGGCCTTT TCACATTTTC 000880 000881 ATGAAAAGGG AGGTTTATCA ACTTTTTCCT AAGTGAGATT ATGACGCTGC CCCCGTAGGG CACCATTCCC TAAGCTGAGT 000960 000961 GCCGTAGAGA ACCAGCAACA CGGGTTATGC AATTGTATAA ACTTGGGAAT TATGAGCGAC GTTGAATTGT TTCCTGCTGC 001040 001041 AGACCTTTCC AGAGCCTTCA GCAGCTAATG TACCTTTTGA AATCACAAGG TATGGAAGGC GTCTCACAGA GTTGACCATG 001120 001121 GGATGATCTC CTGGATTTGT GTTCTCTAGG CTTATTTTGG GAAACACCCC GATAAGGACT GGATGGATGG TGCACAGAAT 001200 001201 ACACAGGGAG TGTCCGAGGC TGAGGTGCTG CCCCAGTGCT TGGTTTCTGG TGTTGTTTCC CTCATGGATA GAGGGCAGGC 001280 001281 AGGGTGGCGG CCACAATGAA ATGAAAGATT CCCTCCCGTT GTCTTGCGTA AGTGAAGTGA TGGTTGCTCT CTTTTCTCTT 001360 001361 TAAGTAGGTA TTAGGGGATC ATTGCCTGGT TTTCAGGCAC TGAAATGGAC ACGCTCCTCT CTCATGCCTG ATTGTGTAAG 001440 001441 AAGCATTTAT TAACCATGAT GAGGAGCAGA CGCTGCCTGG TGTGGGCAGT GCACAGGTGA ATGAGACCTG GAGTTGCCAA 001520 001521 GAGAAGAAAG AAACTCGTAG TGACTTCCCT TTGATCTTGC TTTTCTGGGT GCGTTGATAA TCATCTCCAC CTCAGTTACC 001600 001601 AAACACAAAG ATTTCAGGAG TGCCTTGGCC GAAGTTCACT GCCGGCCAAT CCCAGTCTTG TAATGACTAT TGTTGAAATG 001680 001681 CTGTGGCTTT TCCTTCCCTG TTCATATGTC TTGTGTGGAC AGTGTCACAT GCCCAGCCAC CAGATCATAA TAGTATGTTT 001760 001761 AAAAGATTGC TCTAAAATGG GCTTTTGGAA GGGGAGTCAA TCAATCAACC AATCAATCAA GGGAGTCATG AATTCTCAAT 001840 001841 GTGCCTCTTT TACTTTGCGC AATTTGAGAC TTCATATCAG TCATCTCTGT CCATGAGAAA ACATGATGGC ATTGTAGTTA 001920 001921 AAGGCCTCTT ATGTGCCAGT CACTGTGCTG AGTACTAGGA GACAGCCCGT GAGATGTAAT TTCTGTCCCA ATTGAAAGAA 002000 002001 GTAAACAGTA ACAATTACAG CTGCCGTTTA TCAAATACCC ACTCTGTACC AAACACTGCT TGAAGACTGA AGGTTTGCTC 002080 002081 TGAACAATCA CTCTCATATT GCTGGCAATG TTTCATACAA AGATTTTTTG AATGGAATTG ACTATAATTG TTGGGGAATA 002160 002161 AATGAAATTG CAAAGCACCT TGTACAGCAT TGGCCTTGTG GTAAGAGTGA AGGAAAATAG CCTTCACTGC CCATTGTAAT 002240 002241 TATAATGCCG GGCAACATCT GTTTCTTATT CATCTTTGTC TTCTCAGTAC CTGGCCCAGA ACACACACTT GATAAATGTT 002320 002321 TGTTAACAAT GAATGATGGG CTGGGCGTGG TGGCTCACGC CTATAATCCC AGCACTTTGG GAGGCCCAGG CAGGCAGATC 002400 002401 ACTTGAGATC AGGGGTTCCA GACCAGATTG GCCAACATGG TGAAACACCG TCTGTACTAA AAATACAAAA GTTAACCAGG 002480 002481 TGTTGTGGTG TACGCCTGTA ATCCTGGCTA CTCAGGAGGC TGAGGCAGGA GAATTGCTTG AACCCAGGAG GCAGAGGTCG 002560 002561 CAGTGAGCCG GGATTGTGCC ACTGCATTGC AGCCTAGGCA ACAGAGCAAG ACCTCGTTTC AAAAAACAAA AAAACCAACC 002640 002641 AACAAACAAA AATCGATGAT GATGACTCAA GTAAGAAATA ACAATTAACT ACTCGGCAAA ATAGAGTAGA TAGACAGTCA 002720 002721 CTTTCATACT TTTAACTTTT AGACTTGTTT ATTTTGCTCA TTTGGAGAAC TAATGACGTG TGACTGACGT GGAGACTTGA 002800 002801 GTCGAGTCAT CAGATAAATC AAGGCAGTGC CGGGTATTAG CACGCATTAT CTTGATAATT CAGGCACAGA TAGTTTGGGG 002880 002881 CCACATATTC TTTGGAAAAT GTCCTTACTT TCACGTGAAT TTCCACATTG TGGATTGGCG GAAGTTCGGG AACATTACAA 002960 002961 ACGCTTACCA TGAACTCAGG ACAACTTGCT CTTAGATGTG GGTCTATATT TTGCAGGAAG GGTTACCATG GGATTGATTC 003040 003041 TGAGCAGGCA AGGTTCTGCA TGGAGATGGC TTTAGGATAA GTATATGGGT TTTCCTGTGA TGTCGACAGC ACATGATATT 003120 003121 TCCATAAAGG TCACTTAACA TAAGCGCACA AAAGCCTTCA TGGGTTGTAA CGCTGCAGCT GCCAAGCCAG GTGAGCCAAG 003200 003201 TCTCACTGCC TGGGGAATTG TGCCGGAGTC AAGACTAGAA CCGGCGCTGC CTGGTGTTAA CAGGAGCAAA CAGGTTCGTG 003280 003281 GCAGTGATCT ATGGAGTCTC ATTTCCAGCT CCTTTATTCA CTTGTTCATA ACTTTCTGCC AAATTCTTTG AGGCTGAAAG 003360 003361 CTTTCTTGTC TGGTGCTGGG CCATGACTGC CCAAAGGTAA ATTTTTCTGG AGAGTTTCTG CCAGAGCTAT TAAGCCTTTC 003440 003441 TTGAATCAAT GAAAAAAGAA ATTCTTCATT TGAATTTGTT GGCGTCGGTT CTCTGGTAAT TCAGCACTTA GCCCAGTCAC 003520 003521 CCAGAAGATC TCTCTCTCTC ACACATACAC ACACACACCA ATACTTGAAT ACACACATGC ACACCCAACC CACACACATA 003600 003601 AGCAGACACA CACCCAATAC ACTTGCACAC AACTTACACA CATGCACACT CACATACACC CATACTCTCA CACACCACAT 003680 003681 ACTCATATGC ACACACACCC AACACACACC CTCATGCACA CTCTCATACA CCCAGTACAT TCACTATACC ACACACACAG 003760 003761 ACGCACACAC CACACATGAA CACACACACA CACATGCAGG GCCTACACTC TTGGTCTAGA CCATGCAAAC CTGAACCACA 003840 003841 GGGTCATTTT TCCCTTGGGG GCACTGCAGG CTCTCGCACC TGGTCCTGTG GGAAAGGGAG GCTGGAGGAG CAGACAGACT 003920 003921 CATCAGATCA TGCCCTCCAT TCTTTCTCAG CAACAAACAA ATGCACTCAT TTGCCTGCTG CTTCAAAAGC AGGAGTGTGG 004000 004001 CCTGGGTGCG GTGGCTCACA CCTGCAATCC CAGCACTTTG CAGGGCCGAG GCAAGATCGT TTGAGGACAG GTGTTAGAGA 004080 004081 CCAGCCTGAG CAACAAAGGG AGACCCGTCT CTACACAAAA TTAGAAAAAA AATTAGCCAG GTGTGATGGT GCACACCTGT 004160 004161 AGTCCCAGCT ACTTGGGAGG CTGAGGTGGG AGGATGGCTT GAGCTTGGGA ATTGGAGGCT GCAGTGAGCT GAGATCACAC 004240 004241 CACTTCACTC CAGCCTGGAC CACACAGTGA GACCCTGTCT CTAAAAAAAA AAAAGAAAAA AAAAAAAAAA GCAGGAGCGT 004320 004321 GAACTTGAAT GGGAACAGCA GTGAACGCTG AGTCCTGGGC ACATTCACTC AATGCCTGTT ACCACATAAG AGGGGGAGAG 004400 004401 GGGCAACCCC CCGGACCTAC ATTTTTATAT TGGTAGGAAA TAGTAACCCT TGAAAACAAG AGGAAGGAGG AAGGCACTGT 004480 004481 GGCTACACCC CGGCTATGGA GGTGAGCACC AGCCTGCCTC TGTGTCGTCC TCCGTTTCCT CCATGCCTTC CATACTCAGT 004560 004561 TGAGTGGATG CCACTTGTCA AGAGCTATAG TCAGTAGCAA TTACTAGCTC CAGCTGTCTG GAGGGAAAAG TGCTGGCTTG 004640 004641 ATGAATGAAG TGACTTCTAG TCCGTCAGAG GTATGGTTCT GGGAGAGCAA CAATCATAAC TAATAGTTTT TTACTTAACA 004720 004721 GACCTTTTTA CAACCCGAAA CTCTCTTCAC AAGGGCTCTG AAAAATAACT GGACACTAAC ATGACCTGAT TTGGGAAAAA 004800 004801 ACTGAATTCT CTAATTTTCC ATATTGAAAA ATTATATTGC CTTGTTCTTT TATTCTGCAA AAGGAAAACA GAAAAAGGCA 004880 004881 AAAGTCACAG AATGGAAAAG GGCAAAGAAT TTAAGAGGAT GAATTGAAGA AGAAAATAAA ATGCTGAGGT TGGCTTGGCT 004960 004961 TGTTCCAGGG AGAACCTGGC TGGAACAACC GGGTGTTCAT CGGGAATTCA GAGGCTGTGC CGACCCTCCA GGGAGCCAGT 005040 005041 GCCCGACCTG TCCTCCGGGT GGGGACTGAG GATGCAGAGA ATGGCTCAAT CGGCTGCACG AGAGGCCCTG CCCTGTGGGC 005120 005121 GCTGAGCAGT AGCCATGGTC CCCTGCCGGG TCGGCAGAGT TACCTTTGCT GCTGCATCCA TGAAAGACCC TTTCTCCTTG 005200 005201 AGCTAGTCGG GGAACCCACG GTGGCCAAGG AAATGCACCA CCTCCTTCTA CAGACACTTT CCTCCTGGCT GCAGGGGCTT 005280 005281 TCTGGTGAGT GTTTTAGTCT CTTCCCAACT GTTTCTTTTA ACCAGATTTC ACCTGCATGA AAGCCCCCAG TAGGGTGTCA 005360 005361 GAATGTGGGG AGAGTGGGGG GATACTTGGC GGGATTGCCC GAGCCTCAGT CCCTAGCCTG TCACCTCGCT GGGGAGTGTG 005440 005441 GCAGTTCAGG GCCATCATCT TCACGGCAGC TACGTTCTGC AGAGTATTCC ATGCTAAAGC CAGGAGCTTC TGGGGGAGGG 005520 005521 TGGTGGGTTT CACATGGATC CTAGCATTTC CTGCCCGTGT TACAGGCATG TGAAACACTC GGTTCTTCTC TCTTATGAAA 005600 005601 AGAACTAGAA CAAATGGAGT CCGTACATGT GGCCTTCGGG CACTGGGGTG GCTCAGAGGG GAGGAGAGGT GCTTAGAGTT 005680 005681 GGTTTTTTGG ACAAGACCCA GTGGAGCAAT TCTAATTCCC TCTCTGTTGA ATGACAGCCA ACACTCTTGT GCTGTTGATC 005760 005761 TTCTCACCTC CGTATTTGTT TATGAATTAT CTGGAAAGGT GATTGTATGA GCTTACCGAG ACAGAGTTCC AGGGGCCCCT 005840 005841 GGGGGAAGCC GGGCAATGTC TCCACAAGCA AAGCCATGTG GGAGGGCCAG TGGGACACGC AGAGGAAAGC CCCTGTTCCT 005920 005921 TGCCACCGAA GAGAGGGTTT TCATGCTCTG AATTGGTACA GTGAGCTCCC TATAAGCACT AAACTCACCC GCTGAAACAT 006000 006001 TGGCTCTTTA TTTTGCGCAA TTTAAG |
Predicted Small Protein
Name | NONHSAT106525_smProtein_5336:5572 |
Length | 79 |
Molecular weight | 8516.912 |
Aromaticity | 0.141025641026 |
Instability index | 53.0948717949 |
Isoelectric point | 11.786315918 |
Runs | 11 |
Runs residual | 0.0073483427142 |
Runs probability | 0.0495094024505 |
Amino acid sequence | MKAPSRVSECGESGGILGGIARASVPSLSPRWGVWQFRAIIFTAATFCRVFHAKARSFWG RVVGFTWILAFPARVTGM |
Secondary structure | LLLLLLLLLLLLLLLEEEEEEEEELLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLL LEELEEEEEEELEEELLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLHH HHHHHHHHHHHHHHHHLL |
PiMo | oooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiTT TTTTTTTTTTTTTTTToo |