NONHSAT106651
Revision as of 01:40, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT106651 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1977 nt |
Genomic location |
chr6+:2356966..2362624 |
Exon number |
3 |
Exons |
2356966..2357275,2358463..2359660,2362156..2362624 |
Genome context |
|
Sequence |
000001 GAAATTCATT TCACGTAGTG AGAAAGCCAG AGGTAGGAGA TCCCAGGTTC CGCAGCTTGA CAACTCGTAC TTCCTCCATC 000080
000081 CTTCATGCAT TGTAGAATAG CAGCCTCCAA AGATGTCCGT GCCCACATCC CTGGAAACTG TGAAGATGAA GAATCACAGT 000160 000161 TAATTACAGG AAAGAGCCTC ATTTTTTTAA AAATTTGAGA TGGGGTCTCC CTATATTGAC CAGGCTGGTC TTGAACTCCT 000240 000241 GGCCTCAAGC GATCCTCCCA CCTCGGCCTC CCAAAGTGCT AGGATTGCAG GCGTGAGTAA TGGGGCCCGG CCACCTCGGC 000320 000321 CTCCCAAAGT GCTGGGATTA CAGGCATGAG CCACTGTGCC CGGCTCATCT TCATCATTTT TAAGTGCACA GTTCAGTGAC 000400 000401 ATTTCTGCAC TTACAATGTT GTGCAGCTAT CGCCACCATC CATCTCCAGA ACTTCTCATC TTCCCAAACC AAAACTCTGT 000480 000481 ACCCATTAAA CACCAACTCC CCATTCTCCC TGCCCCCAGG CCCTGGACAC CCCTATTCTG CTTTCTCTCT CTATGCTTTT 000560 000561 GACCATTTTA GGTAGCTCAC AAAGTGGGAT CATACAATAT TTGTCCTTTG TGTGTGGCTA TTCTCTTAGC ATAATGTTTT 000640 000641 TGCAGTTCAT CCTTGTTGCG GCGTGTGTCA GAATATCATT TCTATTTATG GCTGAGTGGG TATTCCAGTG TATGCACCAT 000720 000721 ATTCTGCTGA TCCATTCCCC TGTTGATGAA CATTGTGCTG CTTCTGCCTT TTTTCTGTTG TGACGAATGC TGCTATGAGC 000800 000801 ATGGATGTAC AAGTACGTGT TTGGGTCCCT ACTTTCAATT ATTTTGGGCT TATACACAGA AGTGGAATGC TGGATCGTAT 000880 000881 TGTGGTGCTA TGTTTAACCT TTTGAGGAAC TACCAAACTG TCTTCCACAA CAGCTGCAAA ATTTTACATT CCTACCAGCA 000960 000961 ATGCGTAAGG GTTCCAGTTT CTCTACATCC TTGCCCACAC TTGTTATTCA CCCTCATTCT CACCTATTTT GCTAAGAGCC 001040 001041 ATCCTAGTGG CTGTGAGGTG ATATTTCACT GATATGCACT TCCCTAATGA CTAATGTTGT TGAACGTCTT TTCATGTGCT 001120 001121 TATTGGCCAT GTGTATATTT TCAGAGAAAT GTCTATTCTA GTCTATTCCA TTTTTGAATT AAATTTTGTT TTTGTTGTTG 001200 001201 AGTTGTAGGA GTTAAATGCA TGCATTTATA TTGTTTTCTT TTTGGTTTCC AAGTCATACT AACAAATTGT ACTGTTAAGT 001280 001281 TGAAAATAAA ATGTGAAGAT TTAGCTCACG TACTCTTGAT ATTTCTTGAT AGTGTTGAAT ACGGTGTTTA TATAGTTAAT 001360 001361 AGTTGCTTTA AAAATGCCAT ATAAGTCTCA GCCTTCATAT TTCTAGGATT GAGAAGACAA GTGGTCATGC CACTGATACT 001440 001441 CACACCTGGT ACTTAAAAAA TGCCATTCCC AAAGTGTTGG GATTACAGGC ATGAGCCATT GAACATGGAT GATCCAGGAG 001520 001521 GACAAGAAAG TGCAAGTTTG GGATCCTGGA ATTCCTGCCA ATCTGCAGGT GGAGGCTTAA GCCAGTACTG ATTTAATCTG 001600 001601 AAACCTAACG TGAATGAAAC AGCTTGCACA GCGCAGCAAG CGGCAGGAGC AGTGTCTCCA TGCCAAGCTC ACCAACATGT 001680 001681 CCATTTCCTT ACTGGGTGGT GACTGTCTCA AAAGGAGGAT CCACGTTTGG TTTTACTTTG TATCACCATG ACTTGGCACA 001760 001761 GGATCTGGTA CATAGTAGTT CTCAGTAGAC GCTAGCTGAG GGGCAAATAA GGAATGGTAC AACGTGTGTG GACACAGGTT 001840 001841 AACCTTATGG AGGTCAGAAG AAGGCAGAGG GGAGCAAATG GAGTCCCAGA CATCAAAGGA ACGTCCCCAA AGCCCTCCCC 001920 001921 ACCCACCTCT CTCTTTCTCT CTAACAGTAG GGTTTACAAA GAGCAGCTTA TTCCGGG |
Predicted Small Protein
Name | NONHSAT106651_smProtein_1613:1750 |
Length | 46 |
Molecular weight | 5319.2647 |
Aromaticity | 0.0888888888889 |
Instability index | 96.8824444444 |
Isoelectric point | 10.1972045898 |
Runs | 7 |
Runs residual | 0.00669191919192 |
Runs probability | 0.0363767128472 |
Amino acid sequence | MKQLAQRSKRQEQCLHAKLTNMSISLLGGDCLKRRIHVWFYFVSP |
Secondary structure | LHHHHHHHHHHHHHHHHHHHLLHHHHLLLLLLLLLEEEEEEEELL |
PRMN | - |
PiMo | - |