NONHSAT106738

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT106738

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

2305 nt

Genomic location

chr6-:2783577..2800199

Exon number

13

Exons

2783577..2783808,2784136..2784283,2784410..2784554,2784653..2784762,2786137..2786268,2788724..2788842,2789857..2790040,2792120..2792212,2792504..2792631,2793677..2794019,2795305..2795503,2799464..2799564,2799829..2800199

Genome context

Sequence
000001 GAACGAGTGT TTGACACTCC TGACTTTGCA GGTGGACAGA AAAACCACAT CTGTCCAGGC CCCAGCACAG GAGTATGATC 000080
000081 CTGGCCACTT CTAAAAATAC TCAGGATCAG AAAGAAAAAT CTTTACTTTG ACTAGAAAGT GTTATTATAT AGGAGACTTT 000160
000161 CAAGATCTGT AGCAAAACAC CTTCTATGTG CCATGCATTT TGTATTCATT TTTGAACTCT CTGGTCCTAC ATGTAGGTGT 000240
000241 CATTTGCTCA GTTTTACGAA TGAAGGATGG AGGTTCAAGG TGTGGCTGCA ATGAGCCAGG ACTGGAAACC AGGCTTAAGT 000320
000321 GCAAAGCCAT GCTCTCTCCA CAGCCTCTGC CCCTTAGTGA GGGATGTGGT AGAGGGCGGA TCACCTGAGG TCAGGAGTTT 000400
000401 GAGACCAGCC TGGCCAACAC GGTGAAACCC CCTCTCTACT AAAAATACAA GAATTAGCTG GCCTTGGTGG CGTAAAATAT 000480
000481 GTATTTAATG ACTCATTAGC AAAATGGAGA TTTTCCTTTA AGTAGTTCTT ATGATACAGA TAACAACTAT GTTTTGTTGT 000560
000561 TGTTGGTTTA TTTATTTATT TATTTATTTA TTTACTTACT TTTTTGAGAT GGAGTCTCAC TCTGTCGCCC AGGCTGGGGT 000640
000641 GCAATGGCAC AATCTTGGCT CACTGCAAGC TATGAGTAAG AAGGCGTGTT TTCACCGGAA GCCACAAGCT AAAGCAAAAT 000720
000721 AGGCAAGAAG CATAAACGGA CTTGCTCAAA AGCCTCTCTC TTTCCTCAGA GCCCAGCTAG CCCACGTGTG CCTTTGTGAG 000800
000801 ACAGAAAAAG ACATCCTCTC CTCTGGATTT CTGCCTGCTC ACTGTCGGCC CTCAGCCAGG CCCCCTGGGC CTTGCCCTGC 000880
000881 CCACACAGCC ACACAGCAGC CATGTTCCCC ACCCATGCAG CAATTTCAAG TGTGGATGAC AAACACCTGG AGAGAAGCAG 000960
000961 CAGCTGGTGT CAGAAGGAAT GACAGGGGAG GGGGACAAAG GAGGCAAGCC CAGGATAGGA TTTGAACCCG AGCAGACAGA 001040
001041 CTCCTGGACC CACGCACCTC ACCAAGTGTG GTTGGCTAGC GAGCCGAAAG AACCCTGGAG GCAGGGTGCT GAAGGAGGGG 001120
001121 AGAGTGGTGT GAGGCTCTCT GTTGAGACTC CATCTCAAAA ATAAAATAAA ATATAATAAA TAAATCCAGC TACTAGGTGT 001200
001201 CTGGTGTGTC CTACCCTCTG TGGATGGCAC GGCTGAAGCG ATTCTCCTGC CTCAGGCTCC TGAGTAGCTG AGATTACAGG 001280
001281 TGTGCGCCAC CACACCCAGC CAATTTTTAT ATACTTAATA GAAACGACGT TTCACCATGT TGCCCAGGCT GGTCTCAAAC 001360
001361 TCCTGATCTC AAGTGACCTG CCCGCCTCAG CCTCCCAAAG TGCTGGGATT ACAGGTGTGA GAATCAAAAT TGGCCAGGCA 001440
001441 CAGTGGCTCA TGCCTGTAAT CCTAGCATTT TGGGAGGCTG AGGCAGGCGG ATTGCCTGAG CTCAGGAGTT CGAGACCAGC 001520
001521 CTGGGCAAGA CAGTAAAAAA AACGACTGTT TAGAAATATG GAGCTGCAAG AAGAAACCAG GACAAGTGGG AAAAAATGGG 001600
001601 CATGGGACTA CTGGAGTCTT CCACAAGCCA TTTAAAGAAT TCCTTTATGT ATTCCTTTAA AGAGATCAGA CAAGCAGCAT 001680
001681 ACTCAGTGGG TCCAATACAC CAATGGTGAA GGAGGGACAT TTATTCAAAT CTACAAAGGG ACAGAGCACG AGAGAGAAAA 001760
001761 GAAGTGATTT GCAAGAAATG CCACACACAG AGACAAAGGA GAGTTTCAGT CATGACACAC ACTGTCCTCC TGGCCTATGT 001840
001841 GCAGGCGACC ACAGACCACC ACTGCTTGTA CACTTGGTGA CCAAAACAAT CCCATGTAGC AAAACAGCCT GACTTAGCTC 001920
001921 TAGTCGTGAA GGCTATGGAG ACATTCACCA GGATGGAAAC ACTAAAAACA AAACATCCCC TAAGACCAAA GAAGAGGAGA 002000
002001 GCTTTCCTGA TCTTTTTCTT CATATAGTGT CTAGAGTCTT CCATTTCTAC CTTGGGAGCT GTCCAAAGAA AACCCATCAC 002080
002081 ACTCACCTAT GTCCTCGCTG GCAAACCTGA CAAGCCTCCG TGCCACGTAG AGTGGGTCCT CTCCTCCCTC GAGCATGCGA 002160
002161 GCCAGCCAGT AGAGGGAGGC GTTCTGGTCT GAGCCCCGCA TGGACTTGTG CAGGGCGGAG ATGCAGTTGT AATGCTCCTC 002240
002241 ACCTGACATC ACAAAGAGCA CCACTCACAC AGAGCTCACA GGAGGGGCGC CCAAGCCATC TTCAC
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Predicted Small Protein

Name NONHSAT106738_smProtein_530:721
Length 64
Molecular weight 7461.7975
Aromaticity 0.190476190476
Instability index 45.1587301587
Isoelectric point 9.07196044922
Runs 11
Runs residual 0.0296404275996
Runs probability 0.0108236578825
Amino acid sequence MIQITTMFCCCWFIYLFIYLFTYFFEMESHSVAQAGVQWHNLGSLQAMSKKACFHRKPQA
KAK
Secondary structure LEEEELLHHHHHHHHHHHHHHHHHHHHLLHHHHHHHHHHHHLHHHHHHHHHHHHLLLHHH
LLL
PRMN LLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
LLL
PiMo ooooooTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iii