NONHSAT106738
Revision as of 01:40, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT106738 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2305 nt |
Genomic location |
chr6-:2783577..2800199 |
Exon number |
13 |
Exons |
2783577..2783808,2784136..2784283,2784410..2784554,2784653..2784762,2786137..2786268,2788724..2788842,2789857..2790040,2792120..2792212,2792504..2792631,2793677..2794019,2795305..2795503,2799464..2799564,2799829..2800199 |
Genome context |
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Sequence |
000001 GAACGAGTGT TTGACACTCC TGACTTTGCA GGTGGACAGA AAAACCACAT CTGTCCAGGC CCCAGCACAG GAGTATGATC 000080
000081 CTGGCCACTT CTAAAAATAC TCAGGATCAG AAAGAAAAAT CTTTACTTTG ACTAGAAAGT GTTATTATAT AGGAGACTTT 000160 000161 CAAGATCTGT AGCAAAACAC CTTCTATGTG CCATGCATTT TGTATTCATT TTTGAACTCT CTGGTCCTAC ATGTAGGTGT 000240 000241 CATTTGCTCA GTTTTACGAA TGAAGGATGG AGGTTCAAGG TGTGGCTGCA ATGAGCCAGG ACTGGAAACC AGGCTTAAGT 000320 000321 GCAAAGCCAT GCTCTCTCCA CAGCCTCTGC CCCTTAGTGA GGGATGTGGT AGAGGGCGGA TCACCTGAGG TCAGGAGTTT 000400 000401 GAGACCAGCC TGGCCAACAC GGTGAAACCC CCTCTCTACT AAAAATACAA GAATTAGCTG GCCTTGGTGG CGTAAAATAT 000480 000481 GTATTTAATG ACTCATTAGC AAAATGGAGA TTTTCCTTTA AGTAGTTCTT ATGATACAGA TAACAACTAT GTTTTGTTGT 000560 000561 TGTTGGTTTA TTTATTTATT TATTTATTTA TTTACTTACT TTTTTGAGAT GGAGTCTCAC TCTGTCGCCC AGGCTGGGGT 000640 000641 GCAATGGCAC AATCTTGGCT CACTGCAAGC TATGAGTAAG AAGGCGTGTT TTCACCGGAA GCCACAAGCT AAAGCAAAAT 000720 000721 AGGCAAGAAG CATAAACGGA CTTGCTCAAA AGCCTCTCTC TTTCCTCAGA GCCCAGCTAG CCCACGTGTG CCTTTGTGAG 000800 000801 ACAGAAAAAG ACATCCTCTC CTCTGGATTT CTGCCTGCTC ACTGTCGGCC CTCAGCCAGG CCCCCTGGGC CTTGCCCTGC 000880 000881 CCACACAGCC ACACAGCAGC CATGTTCCCC ACCCATGCAG CAATTTCAAG TGTGGATGAC AAACACCTGG AGAGAAGCAG 000960 000961 CAGCTGGTGT CAGAAGGAAT GACAGGGGAG GGGGACAAAG GAGGCAAGCC CAGGATAGGA TTTGAACCCG AGCAGACAGA 001040 001041 CTCCTGGACC CACGCACCTC ACCAAGTGTG GTTGGCTAGC GAGCCGAAAG AACCCTGGAG GCAGGGTGCT GAAGGAGGGG 001120 001121 AGAGTGGTGT GAGGCTCTCT GTTGAGACTC CATCTCAAAA ATAAAATAAA ATATAATAAA TAAATCCAGC TACTAGGTGT 001200 001201 CTGGTGTGTC CTACCCTCTG TGGATGGCAC GGCTGAAGCG ATTCTCCTGC CTCAGGCTCC TGAGTAGCTG AGATTACAGG 001280 001281 TGTGCGCCAC CACACCCAGC CAATTTTTAT ATACTTAATA GAAACGACGT TTCACCATGT TGCCCAGGCT GGTCTCAAAC 001360 001361 TCCTGATCTC AAGTGACCTG CCCGCCTCAG CCTCCCAAAG TGCTGGGATT ACAGGTGTGA GAATCAAAAT TGGCCAGGCA 001440 001441 CAGTGGCTCA TGCCTGTAAT CCTAGCATTT TGGGAGGCTG AGGCAGGCGG ATTGCCTGAG CTCAGGAGTT CGAGACCAGC 001520 001521 CTGGGCAAGA CAGTAAAAAA AACGACTGTT TAGAAATATG GAGCTGCAAG AAGAAACCAG GACAAGTGGG AAAAAATGGG 001600 001601 CATGGGACTA CTGGAGTCTT CCACAAGCCA TTTAAAGAAT TCCTTTATGT ATTCCTTTAA AGAGATCAGA CAAGCAGCAT 001680 001681 ACTCAGTGGG TCCAATACAC CAATGGTGAA GGAGGGACAT TTATTCAAAT CTACAAAGGG ACAGAGCACG AGAGAGAAAA 001760 001761 GAAGTGATTT GCAAGAAATG CCACACACAG AGACAAAGGA GAGTTTCAGT CATGACACAC ACTGTCCTCC TGGCCTATGT 001840 001841 GCAGGCGACC ACAGACCACC ACTGCTTGTA CACTTGGTGA CCAAAACAAT CCCATGTAGC AAAACAGCCT GACTTAGCTC 001920 001921 TAGTCGTGAA GGCTATGGAG ACATTCACCA GGATGGAAAC ACTAAAAACA AAACATCCCC TAAGACCAAA GAAGAGGAGA 002000 002001 GCTTTCCTGA TCTTTTTCTT CATATAGTGT CTAGAGTCTT CCATTTCTAC CTTGGGAGCT GTCCAAAGAA AACCCATCAC 002080 002081 ACTCACCTAT GTCCTCGCTG GCAAACCTGA CAAGCCTCCG TGCCACGTAG AGTGGGTCCT CTCCTCCCTC GAGCATGCGA 002160 002161 GCCAGCCAGT AGAGGGAGGC GTTCTGGTCT GAGCCCCGCA TGGACTTGTG CAGGGCGGAG ATGCAGTTGT AATGCTCCTC 002240 002241 ACCTGACATC ACAAAGAGCA CCACTCACAC AGAGCTCACA GGAGGGGCGC CCAAGCCATC TTCAC |
Predicted Small Protein
Name | NONHSAT106738_smProtein_530:721 |
Length | 64 |
Molecular weight | 7461.7975 |
Aromaticity | 0.190476190476 |
Instability index | 45.1587301587 |
Isoelectric point | 9.07196044922 |
Runs | 11 |
Runs residual | 0.0296404275996 |
Runs probability | 0.0108236578825 |
Amino acid sequence | MIQITTMFCCCWFIYLFIYLFTYFFEMESHSVAQAGVQWHNLGSLQAMSKKACFHRKPQA KAK |
Secondary structure | LEEEELLHHHHHHHHHHHHHHHHHHHHLLHHHHHHHHHHHHLHHHHHHHHHHHHLLLHHH LLL |
PRMN | LLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLL |
PiMo | ooooooTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii iii |