NONHSAT106754
Revision as of 01:40, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT106754 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1201 nt |
Genomic location |
chr6-:2812684..2821649 |
Exon number |
9 |
Exons |
2812684..2812915,2813244..2813391,2813518..2813662,2813761..2813870,2815245..2815376,2817832..2817950,2818965..2819148,2821228..2821320,2821612..2821649 |
Genome context |
|
Sequence |
000001 TTTTTTTTTT TTTTTTTTTG AGATGGAGTC TTGCCCCGTT TAATCATTGC AAGCATCCAT TTTTCTAGTA AGGGAATGCC 000080
000081 TTTATTTGAC TTCACAAAAC TTAGAAAACT CTTTACAAAC AAATGAAAAA ATAGGCAGGA AGCACAGTTC ATATTTATGG 000160 000161 AACAGAACGG GACAGCTAGA TGCTTTGGTT CTTTGGGGGA AGTATTTAGC CTAACCCAAT CACAACATAT ATATTTTCTA 000240 000241 ACTCAGGGAT TCATGAGTTA TTTTCATAGA TTGCTCATGG TTATTACCGA AGGTTGCTCT GTCTCTTTGA AACCAAAAGC 000320 000321 TATAAAGAAC TACAGATTCT CTTCCTCCTA AACCAATTCT AGTCCATGCA CATAACAAAA GATCAAAATA CATCGAGCAA 000400 000401 AAACTGAAAG AACTGAAAGA AGAGACAGAT AAACAAAGCA ACTTTGAAAA AGATGTAAAA CGTTAGAGGC TTTAAAATAT 000480 000481 TTTATTATTA TTATTTTTAG CAGAGGTGAG GTCTTGCTAT GGCACCCAGG CTGGTCTCAA ACTCCCAGGC TCAAGCAATC 000560 000561 CTCTCACTGA CATGTGACCC GGTCATTCCA CTTCTATTAA TAGGTGTTTA CCAGAAAAGA AAGCATAGAC CCACACAAAG 000640 000641 ACTTGTATGC ACAAATTAAT AGTTTTATTT GCAATAAATT ATTGATAAAC TTTACAACAT GTGTGAATCC AAAAATACCT 000720 000721 ATGTTGAGTG AAAGAAGCAA GACAAGAAAA CAGGTGGGGC GTGGTGGCTC ATGCCTGTCA TCCCAGCACT TTGGGAGGCC 000800 000801 GAGGCAGGTG GATCACGAGG TGGCGTGAAC CCGGGAAGTG GAGCTTGCAG TGAGCTGAGA TCGCGCCGCT GCACTCCAGC 000880 000881 CTGGGTGACA GAGCAAGAAT CCGTCTCAAA AAAAAAAAAA AAAAAAAGAC TAGAAAAGAG TATATATTAT AGAATTCTTG 000960 000961 TAATTGCTAA TCTCGGCCCA TTGCAACCTC CGCCTTCCAG GTTCAAATGA TTCTCCTGCC TCAGCCTCCT GAGTAGCTGG 001040 001041 GATTACAGGA CTGTGCCACC ACACCTGGCT AATTTTTGTA TTTTTAGTAG AGACAAGGTT TCCCCACGTT GGCCAGGCTG 001120 001121 GTCTTGAACT CCTGACCTCA AGTGATCCAC CCACCTCGGC CTCCCAAAGT GCTGGGATTA CAGGCGTGAG CCACCATGCC 001200 001201 C |
Predicted Small Protein
Name | NONHSAT106754_smProtein_770:1009 |
Length | 80 |
Molecular weight | 8708.0683 |
Aromaticity | 0.0632911392405 |
Instability index | 86.2481012658 |
Isoelectric point | 10.1797485352 |
Runs | 11 |
Runs residual | 0.00104040228889 |
Runs probability | 0.0444267797208 |
Amino acid sequence | MPVIPALWEAEAGGSRGGVNPGSGACSELRSRRCTPAWVTEQESVSKKKKKKRLEKSIYY RILVIANLGPLQPPPSRFK |
Secondary structure | LLLLHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLEELEEELLLHHHLLLLLLEEE EEEEEELLLLLLLLLLLLL |
PRMN | - |
PiMo | - |