NONHSAT106942
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT106942 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2878 nt |
Genomic location |
chr6+:3040682..3047375 |
Exon number |
17 |
Exons |
3040682..3040821,3041076..3041148,3041294..3041403,3041625..3041705,3041953..3042040,3042314..3042503,3042618..3042744,3043218..3043367,3043716..3043790,3044000..3044143,3044346..3044483,3044640..3044713,3044948..3045696,3045943..3046083,3046592..3046687,3046794..3046883,3046964..3047375 |
Genome context |
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Sequence |
000001 AGCTGTAGTA CATCTGTCAT CAAATTCTAG TCTTGTTCAC TGCTTTAAAG TTTTTTATTA TTTTCCACAA TTTTAACTAA 000080
000081 ATCCTGAATT CTTTCTGGGC TATAAGTTCC CAATGCATTC AACATTTTTT TCCTTTTATT ACCACTGCAC TCCAGCCTGG 000160 000161 GTGACAGAGC AAGACTCCGT CTCAAAAAAA AAAAAAAAGA AAAGAAAAAA ATAGTGCCCA ATGTTAATCT TTGTTTTTTT 000240 000241 TTTTTTCTGT TTCCATAAAA ATGCCTCATT AAAAATTTGT TTGTCTTCAT CATATGCAGA GGCTTGTAAG GCACACCTCT 000320 000321 ACATAGAAAT AAAGGTCAAA AGTAAACTAA CTCCTCACTA GTACATCTAC AAACTTTTCC TTGATTTTCT CTTATTGAAT 000400 000401 TAACCCAACC CCATGGTTAC ACAATGACTC TGCCCAATTA ACTCCCAAGC CAAGGATTTA GGCCTTTGTA ATTTCCTGAC 000480 000481 AGAGTAACAG GAGTTAACTC ACTGCAATCT TGGTATTATC AGTACTACAC AAAGCCCTCT TCAGCATAAG CACTGCCCTA 000560 000561 CAAAATCTCC ACAAGTCTTT GTTTCTTTGC AGTCAGCTTC TGCTGACTTG TCCATTGTCT CTCTGGCAAT GTATTTTCCT 000640 000641 ACTTTCTCTA ATAAATCTGC CTTTCTTTAT CAACAACTCT CTTCTCCTGC CTCAGCCTCC CGAGTAGCTG AGATTATAGG 000720 000721 CGTGCGTCAC CACGCCTGGC TAATTTTGTA TTTTTAGTAG AGATGGGGTT TCTTCATGTT GGTCAGGCTG GTCTTGAACT 000800 000801 CCCGACCTCC CTATATCATT ATGTGTTTTT GAATACAAAG AAATCCTCAA CAAAACATTT GCAAATCAGC AATGTATAAA 000880 000881 CAGAATAGTA CAGCATGGCA TAATGGTATT TATTATATGA GCAATGTATG AAAAGAATAG TATAGGCCAG ACACAGTGGA 000960 000961 GACATAATAA TGTTTATTCC GGGAATGCAA GTAAGGTTCA ATATTTGGAT ATCAACCAAT GTAATCCACC ATAGCCTCAG 001040 001041 GTGATCCACC CGCCTCAACC TCCCAAAGTG CTGGGATTAC AGGTGAGAAC CACCATGTTG GGCCGAAAAA AAATGTTTTT 001120 001121 AATTTGACAA TAGACAACTA AATATCTACA GCTATCATTA TGCTATTCTC ATAAAATTCA TTTTGGGAGG CCTAGGTGGG 001200 001201 TGGATCACCT GAGGTCAGGA GTTCGAGACC AGCCTGGCCA ACATGGTGAA ACCCCATCTC TACCAAAAAT ACAAAAATTA 001280 001281 GCCCGGCGTG GTGGAGGGCG CCAGTAACCC CAGCTATCTA GAACTAATAA GATGATATAG CAAGATACAA GGTCAATGTG 001360 001361 TAAAGGTAAA TTGTCTTTTT ATATACCAGT GTCAAAATCC CAGGGAATTT TTGGGAGACA TAGACAGGTT GATTCAAAAA 001440 001441 ATTTATACAG AAAAGCAAAG AAGCTAGAAT AGTTAGAACA ATTTTGAAAA AGAAGAATAG ATTGGATTTA CCCTGCACAA 001520 001521 TTTTCAAATT TACTCTAAAG GTACTTTAAT TAACAAACAC AGTATGATAT TGGCAAAGGA ATAGATGCAA GATAAACAGT 001600 001601 AGAGAGAGTA GAGTGAGAGG AATAGATCCA CATACATATG GCCAATGGAT TTTTAATCCT TTTTAAAATT AATACTCTAT 001680 001681 TATTATTATT ACTATTATTA TTATTCATGA CAGGATCTCT GTTGCCCAGG CTGGACTGAA GTGGCACAAT CATGGCTCAC 001760 001761 TGCAGGCTTG ACTTCCTGGG CTCCAGTGAT CCTCCCACCT TGGCCTCCCA CAGCTGGTAG CACAGGTGTG CACCACCATG 001840 001841 CCCGGCTAAT TTTTTTATTT TTGGTAGAGA TGGGGTTTTG CTATGTTGCC CAAGCTGGAT TTGAATTCCT GAGCTCAAGC 001920 001921 TATCCACCCA CCTCAGCCTC CCAAAATGCT GGGATTACAG GCATGAGCCA CTGTGAGTCT GTGCCTTACA AGAATTAATT 002000 002001 TTTTTATAAT AGTTTAGATT TCTAGAAAAA TTAAGCAGAG CAGGGCAGCA CAGGGTCACC ATGGTGGAGC TGCAGCAGCT 002080 002081 GCGGGTGCAG GAGGTGGTGG ACTCCATGGT GAAGAGTCTG GAAAGGGAGA ACATCTGGAG TTGTGTGACC AAGTGTGTGG 002160 002161 ATGACCACAT CCACCTCATC TCAACTATGA CCAAGAAGAT GAAGGAGGCT GTCTTATCCA TTGGGAAATA AAAGTCTTTG 002240 002241 CCAGTGGCCA ATGAGGGCAA GAATGTATTT TTTATAAGGA TTGGGACGGA GATAGTTTGG ATAAGAGCTT CAAAAAGTTC 002320 002321 CTTGTGGATC CCCATTTTTG ATCATCAACA TTTGGATGTG TATTTCTGAA AATTATGCTG TGTGTAGCAA AATGACAGGG 002400 002401 CAATCTTGCA GTAACATTTT CGCCTTGAAG AGAAGGGGGT TTTGATTGGG ATATGTACTG ATATCATTTT ATAGAATGGA 002480 002481 ATGGAATGAA AGCCTAAACC TAGCATTACT TAGCCCCCTG AATTAACAGA GCCCAATTGA GACAAACCCC TGTTGCTACT 002560 002561 ATAAACGGAA TTATTTCATA ATTTATGTGA CTTGTTCATT TCACATGTGT AGAAACACAG CAGATTTTTG TGTGTTGATT 002640 002641 TTGTATCCTA CAATTTTTCT GAATTCATTT ATTAGCCCTA GTAGTGTTCT TGTGGGTTCT TGGGGATTTC CTATATTAAG 002720 002721 ATCGTTTCAT TTGGGAATAA GGATAGGCTT ACTTCTTCCT TTGAAATTTG GATGCCTTTT ATTTCTTCTT GTTTAACTGC 002800 002801 TGTAGATAGA ACTTTCAGTA CAATGTTGAA TAGTAGTGGG TAAAGTAGAC ATCTTTGTCT TGTGTCTGAT CTTAGGGA |
Predicted Small Protein
Name | NONHSAT106942_smProtein_2060:2230 |
Length | 57 |
Molecular weight | 6458.595 |
Aromaticity | 0.0178571428571 |
Instability index | 46.8178571429 |
Isoelectric point | 6.70697021484 |
Runs | 8 |
Runs residual | 0.0104410616706 |
Runs probability | 0.0244877230171 |
Amino acid sequence | MVELQQLRVQEVVDSMVKSLERENIWSCVTKCVDDHIHLISTMTKKMKEAVLSIGK |
Secondary structure | LLLHHHHHHHHHHHHHHHHHHHHLHHHHHHHHHLLLEEEHHHHHHHHHHHHHHLLL |
PRMN | - |
PiMo | - |