NONHSAT107543
Revision as of 01:44, 17 October 2014 by 124.16.129.48 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT107543 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
762 nt |
Genomic location |
chr6-:6366285..6415614 |
Exon number |
3 |
Exons |
6366285..6366842,6369235..6369388,6415565..6415614 |
Genome context |
|
Sequence |
000001 GCAATAGTGG GGACCTTAGT AACCCACTTT AGCAATAAAA CATCTTCCCA GACATTACCT GTTGATTCTT GGGCAAGGCC 000080
000081 CAGAATTTGG TGGACATACT TAAAGAAGAA AGGAATCTTC AGCTAAAGTG TCTACGATCA ATTCAGATTT GGAGGGCATG 000160 000161 GATCTTCTGA CAGTAGGGGC CATTCTAGGA TTTTTTGGTT GAAGAGATGA ACTTCAACTT GGTTCCAGAT GGGTGGTCCA 000240 000241 GCTATTCTGC TGACAACATT TTTCAGGGCA AGGCTTTTGC TACTGGAATG ATTTAAGGAA GATCCCTCAG TGTTTCAGAG 000320 000321 TAAAGATATT TCTAAAGAAG TACCTGTGTC ATTGCCCATC TTGAAGATTG ACTTTTATGG ATTGCTCAAA TACTGATATC 000400 000401 AGCTCAATGT CAATATATAC TCCTACATAT AAAATCCATC TTCTAATCAT AATCACTAGG TAAGATGCTA GTGCAAGTTG 000480 000481 AAGTTCTTAA AGGAGATGAC CTGAACAGCC TTCTTAGtgt accagggaga ccagattgag tttaaactat gtttaccctg 000560 000561 cactcagaca cgcctaggtg tgtctgggag attagtagat ggtgttcaac aaggatctat ttaaacaagg gaGACATTAA 000640 000641 TTTGGATTCC TTTGGTTGTA AATTTCCAAA AAAAAAAAAA AGGTCTAAGT TAAAATGTTT AAGGAGGATG GGGGAAGAAT 000720 000721 GTGATGACTG TTATAGTTAA TGTGAgcttt aggcttggcc gg |
Predicted Small Protein
Name | NONHSAT107543_smProtein_548:739 |
Length | 64 |
Molecular weight | 7525.72 |
Aromaticity | 0.111111111111 |
Instability index | 67.4634920635 |
Isoelectric point | 9.19183349609 |
Runs | 12 |
Runs residual | 0.0455134434726 |
Runs probability | 0.0393849732085 |
Amino acid sequence | MFTLHSDTPRCVWEISRWCSTRIYLNKGDINLDSFGCKFPKKKKRSKLKCLRRMGEECDD CYS |
Secondary structure | LEEELLLLLHHHHEEELLLLEEEEEELLLEELLLLLLLLLLLLLLLHHHHHHHHLLLLLL LLL |
PRMN | - |
PiMo | - |