NONHSAT107543

From LncRNAWiki
Revision as of 01:44, 17 October 2014 by 124.16.129.48 (talk)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT107543

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

762 nt

Genomic location

chr6-:6366285..6415614

Exon number

3

Exons

6366285..6366842,6369235..6369388,6415565..6415614

Genome context

Sequence
000001 GCAATAGTGG GGACCTTAGT AACCCACTTT AGCAATAAAA CATCTTCCCA GACATTACCT GTTGATTCTT GGGCAAGGCC 000080
000081 CAGAATTTGG TGGACATACT TAAAGAAGAA AGGAATCTTC AGCTAAAGTG TCTACGATCA ATTCAGATTT GGAGGGCATG 000160
000161 GATCTTCTGA CAGTAGGGGC CATTCTAGGA TTTTTTGGTT GAAGAGATGA ACTTCAACTT GGTTCCAGAT GGGTGGTCCA 000240
000241 GCTATTCTGC TGACAACATT TTTCAGGGCA AGGCTTTTGC TACTGGAATG ATTTAAGGAA GATCCCTCAG TGTTTCAGAG 000320
000321 TAAAGATATT TCTAAAGAAG TACCTGTGTC ATTGCCCATC TTGAAGATTG ACTTTTATGG ATTGCTCAAA TACTGATATC 000400
000401 AGCTCAATGT CAATATATAC TCCTACATAT AAAATCCATC TTCTAATCAT AATCACTAGG TAAGATGCTA GTGCAAGTTG 000480
000481 AAGTTCTTAA AGGAGATGAC CTGAACAGCC TTCTTAGtgt accagggaga ccagattgag tttaaactat gtttaccctg 000560
000561 cactcagaca cgcctaggtg tgtctgggag attagtagat ggtgttcaac aaggatctat ttaaacaagg gaGACATTAA 000640
000641 TTTGGATTCC TTTGGTTGTA AATTTCCAAA AAAAAAAAAA AGGTCTAAGT TAAAATGTTT AAGGAGGATG GGGGAAGAAT 000720
000721 GTGATGACTG TTATAGTTAA TGTGAgcttt aggcttggcc gg
[back to top]

Predicted Small Protein

Name NONHSAT107543_smProtein_548:739
Length 64
Molecular weight 7525.72
Aromaticity 0.111111111111
Instability index 67.4634920635
Isoelectric point 9.19183349609
Runs 12
Runs residual 0.0455134434726
Runs probability 0.0393849732085
Amino acid sequence MFTLHSDTPRCVWEISRWCSTRIYLNKGDINLDSFGCKFPKKKKRSKLKCLRRMGEECDD
CYS
Secondary structure LEEELLLLLHHHHEEELLLLEEEEEELLLEELLLLLLLLLLLLLLLHHHHHHHHLLLLLL
LLL
PRMN -
PiMo -