NONHSAT108047
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT108047 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
9048 nt |
Genomic location |
chr6+:21666104..22221713 |
Exon number |
26 |
Exons |
21666104..21666250,21666646..21666876,21668878..21669130,21756845..21757488,21783863..21783939,21798892..21799215,21802888..21802971,21821063..21821572,21909701..21909834,21979174..21979293,22020568..22020771,22056775..22056923,22063249..22063471,22110976..22111149,22131470..22131879,22134831..22135385,22146879..22147522,22149003..22149552,22149948..22150680,22174227..22174292,22181388..22181704,22185499..22186406,22191796..22191885,22194274..22194625,22195582..22196028,22221012..22221713 |
Genome context |
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Sequence |
000001 CGGGAGAGGA GTTTCCTAAC ACTTGGAGCC CCTTTGAGTT GTTCTGTGTA TTGGGTGGAG GAGGGTGAAT CCGAGAGGAG 000080
000081 GGAGGAGGGT GAATCCGAGA GGAGGAAGGA GGATGAAGAG CCTAGCCTGC GCCCCACCTC TGATTGTAGA AACCTGCCGC 000160 000161 CGCTCGCCGC CTCTTTGTCT GCTCCGGGAC TTGGAACAAA AGGGGGAACT CTGATGAACT CTCTTTCCTC CCCTCTCCCC 000240 000241 CGGACGCCGG GGTATCTCCC TCTCGCAACT TTGCCGCCCC GACTTTCTCT GCTGTCAGGC CGGGAAAAAG TGTCCGAACG 000320 000321 CCTCGTGGAC TGCAGCGGGG GAAATGTCCC TTAAAAGTGC GACGAAGTGG GGAAGAAGGT GTAATTACTA TTATCAGCAT 000400 000401 CTAGAAAGCA TCATGAATTT GCTGGAGTAC TTCCTAGCAC TGACCTCCTT CATTCTGCGT TGTTCTTACT GGATCTTTCC 000480 000481 ATCAGCCAAC AATATGGAAG TACCAATACA AGGTCAAATC ATTCCTGGAT TCATCTGGAG TTGCTTAAAA GTTAAATCAT 000560 000561 TGGAATTTTT GATGATACCT TTTCTATATG GATTACAATT TGATCGCTGG GAATTCTCCA CCTTAAAGAA GATGACACTT 000640 000641 GTTTACATGA TTGAAGCTGA AACAAGAAGG CAGCGTGTCA CCTTGTTCAG CGTCAGCTGG GAATGTGTGT TGGGCAACTT 000720 000721 AGAACTTTCA CTGCTCTGTG CATGTTTGAG AAAGCAGGAA AGCACCATGC ATATTGATTT TGGGGTTACA CGTAAATTTC 000800 000801 TGCAAGTTAG GTGAATTTGC AAATACAGAA TCTGTAAACA GTAAGGTTTG ACTCTATTAA TGTCAATAAT AAAACATAAT 000880 000881 GAGAAAAATA TGAGATATTG CAATACACAG AATTCAAATA GGGCAATGGG AAGGTGCCTG GGGCGGGTGC TACAGATTGG 000960 000961 GAGGTCAGCT GAGGTGTCTC TGAAGAGGTT TCATCTAAAC TGAGATCTGG ATTACAAGGA GGAGCCTGTC CTGTGAAGAT 001040 001041 CAGGGGGAAG GGCATTTGAG GTGGGAGTGA GTACAGGCAG GGCAAAGGCT CCAAGACAGA ATGAGTTTGG TGTGAGGAAA 001120 001121 CCCAAAGAGA CCACTGTGGC TGCCAGAAAT GGAGAGCTTT GGAGGCAAGT ACAGGCCTGG TCACTAGGGC CTTGTCGGCT 001200 001201 GGAGTGGGGG TAAGGATTTG TGCTCAGTGA GTGATTCTTG CTATATTTCT CCGTAAATGT TGCGGCATTT TTTTCTACCC 001280 001281 TCAGGTGACT ACAGATGTGT TAACACCCAG CATGTTCCGG TAGGAGACTT TCTGGATGGG GAAGATTTCC AGGGGCTACT 001360 001361 GCCACCACAT TCATCTAATT TTCTATTTTT TATAGAGACA GAGTCTTGCT ATGTTGCCCA GGCTGTTCTT GAACTCCTGG 001440 001441 CCTCAAGTGA TCCTCCTGTC TCAGCCTCCC AATGTGCTGA GATTACAGGT GTGAGCCACC ACACCTGATC CTCTTCTGCT 001520 001521 GCTGGTTAAT AGTTACACGC TTTTCCTAAT GCTAATCACT GACAACTACT GATTAATCCA CACATTTTAT GTGTGCCTAC 001600 001601 TTTTAGAAAA CCCAGCCAAA CATCATACCT TCCTAGGTGC AAGAATCCTA TTTCCAACTT TTAAAATTCC CTATGGGAAT 001680 001681 TGGCAACAAG CTCATTTCAC TGGTGGGTTT GCTGAAGCAT TATCACAAGA CAGTCAGAAT GACTGATGAG TGCTCTTCAG 001760 001761 ACTGCAACCT CCGCCTCCTG GGTTCAGGTG ATTCTCCTTC TTCAGCCTCA CGAGTAGCTG GGATTACAGG CGTGCACCGC 001840 001841 CATACCCAGC TAATTTTTAC ATCTTTAATA GAGACGGGTT TTCACCATGT TGGTCAGGCT GGTCTTGAAC TCCTGATCTC 001920 001921 AGGTGATCCA CCTGCCCCAG CCTCCCAAAG TGCTGGGATT ACAGGCATGA GCCGCTGCAC CCGGCTCCAT TCCTTTTCTC 002000 002001 TGCGACAAAC CTGCGTGGTG ATAGGTCCAC TCCCTTGACT AGTTTAATTC TGAAGCTTAT TGATGGATTC CTCAAACAGA 002080 002081 TCTTGTGGAC CAAATTATTC TATTTTTCTG TAGAGCCTGG CGATTTGAGA TAATCTATCT GCACAGTTTT GTAGTGTTTG 002160 002161 CTTCCATCAC TCAAGAGTAA GACAATATGT CAGAGTTATC TTGATGGAGG GATAAGAGAG AGATAGTTTG GAGACAGAGC 002240 002241 AGAAAACCTT TCTAGTGTAC TTGGTAATGA GTGTGAATCA TGGCAATACA GTGAAAGACA GTGATTTACT GCTTTTGAGG 002320 002321 GCGTGCATGT ATATGATTAA CGGATGGAAG TGCAGGACTC CAAGATTTAC TTCCTTCCCT TTCCAGCAGA ATTACCTGAG 002400 002401 ACGAGTAAAA TCTACTGGTG GAGTCACTCC ATTATTCTTA TCTGTGGAGA TCTAGATCTT GATTTGAAAG TTTCTGAGAA 002480 002481 AATCTTCAGC TCAGACTTGA GGGTCAACTT TACCAGCTGA AGGTGATCTG CATTTACTGC TCAACCACAT CTAATTTGAT 002560 002561 GTCCTCTGCA GATTTAAAAT GTGTGCCTTC TTTTCCGTCA CCAAGTCATC CCTGGGTTAC TACTGAACAT CCTTCTCAAT 002640 002641 TCCCCCCGAC CCATGGATGG CTGTTCTCCA TTGTCTGTTT CACCAGATGT CCTCAAAACA AACAGACAGA AGAAGGAAGT 002720 002721 GGCTAATGGA GCTGTGGAGT CCAAGTGTGA CTGCCAAGAG GAATCCAGCA AAGCCAAAAA GCCCAAGCAT GTAGCCCTGC 002800 002801 CCGAAGCACG CCACACGCAT GGAAAACCCA GAGGAAATGA GTGAGGATCA ATGGGAAGAA GAGAGCCAGC CAGGTGAGTT 002880 002881 CGATGCCTTC TCCATCCGTC AGTGAGGGTG TGGAGAGCCT GCAGGCGTGT GCCTCCCTCT GTAACTTGCT ATTCCTTGTG 002960 002961 TAATGTCAAG TGGAAGTGTG AAGCACCACA AACTGCTCTG AGCAGAGCCC ACTTCCCTTC ACCCACGGAG AGCGTGAAGC 003040 003041 AGTTACACCA ACATCAATCA AGGAAAACCC ACAGGCTGAG CTCACACGGT TGAAGCAGGT GAAGTTGAAG ATTTGTCCAG 003120 003121 GAGCAGATAG CTGAAGAGAG AGAGAGAGAA GAGAGAACGG CTTACAGCTC AGGTCCTCTC TCCATGCTTA GGAACCACTA 003200 003201 CAAATGCTAC TGCCTTGAGT CTCATTTTGT TTCCCTCTGG AAACCACATG TGTACCTTGT TTGCAACAGT ATGGGCATTG 003280 003281 GATGGAGTGA AAAACATTCT TAGCTGAGAA AAACAGCAAG TGCGATGTGT CCGAAGTGAG AGGAACGTGG CATATGGAGT 003360 003361 CATGAAGGAA GGCAGGGATA GCCAAAGAGA AATAAGGAAA CCAATGGGTA TGAGAGCAGA GTGGAGCATA GGCAGGGCTT 003440 003441 GGATCTATTA CTGGTTTCTG TGACATGTGT TATGAAGAGT ATCATTTCAC TGACTGGCTC TGCCCAAATA TGTTTGACCA 003520 003521 TATTTACATC CCATCTCTCT CACTCTGGAC TGCTGAAGAA GCTTACACTA TCAACGTACT CCTTTTTTTT TTTTTTTTTT 003600 003601 TTTTTGAGAC GGAGTTTTGT TCTTGTCGCC CAGGCTGGAA TGCAATGGTG CGATCTCAGC TCACTGCAAT CGATGTACTT 003680 003681 CTCTTGCATC TCCATTAAAA ATTTCTTTAT TGTGTTAGTA TTGGATTATA ACCCAAAGTA TAAAAGAAAT ACCCATGAGT 003760 003761 CCATACTGAT ATAAAAAAAG ATCAAATAAA TAAATAACTG GGAGAGTGAG ATGATTTTCC TATGCAGAAG AATGCCAAAC 003840 003841 AAATTATGTA GATTTTCTGC TTACAAATGG GTGGAGCATA ACTTCCCACT CCTTAAATTT GGGATGCATA TAGTGACTTT 003920 003921 CTTCCAAAGA GTACAGTACA GAAAAGTGGG TGATGAGAAG AGTAACTTTA CAGTGAAGAA ACATGACAAA CACTACCACA 004000 004001 GCCAGGCAAT CAAAGTTCAC ATCAATAGTA TAAGGCATGC TGATGGTATG TACCTTTAAT ATAATTTGGT GAGAATGGTA 004080 004081 CTTCACCTCT GTGGTCTTCC TCCCCAAAAC CCATAACCCC AGTCAAACCC TAAGAAAAAC ATCAGCCAAA CTCAAATTTA 004160 004161 GGGCATTCTG CAAAAATAAC TGACTGACTA GTACTCCCTC AAACTGTCAG GGTCACCAAA AACAAGGAAA GTCTAAGAAC 004240 004241 CGTGGGCACG CAAGCTTCCC CTGGTTACCT GAGCTGCTCC TGCCGTCTCC CGCCTGGGCT TCGCCGTGGT GCACCCGATC 004320 004321 CCGGAATCGT GCGTCTGCGC CCTGCGAAAG AAGGACCTGC TGGCGGAGCT CCGGCCGGGG TCTCCTGCCT CGCAGCTGGG 004400 004401 CGAGGGGACT TGGAGGACAG GGTGAAGCTG CAGAAGACCT GGGGTGGGAT GGCTAGAGAG GACGCCAAGG ACTGGGGAAG 004480 004481 GGGAAGTTAG GAATACCTTA CATCCAATGC CCACCCGTGC TCCGCAGGGC AAGGGCAGCC GTCGCCTCGG CCGCGTGCAC 004560 004561 CCAGCTCAGG CTGTTCCCAG GGATTTAGTC TGGGGGGACA ACCCATGGCG AGATGTGGTG GCATTTTACC TCAGAGTGGA 004640 004641 GCTGAAGATG GATAAACAAG GTATCTGATG TATCTGCCTG AGAAGGCAGA GCTGGAGAAA GGCGGAGCGA GGGAGCGCGT 004720 004721 GAAAAGAAAG AGATGCCGAA TGCCGGGTGA TTGTCTGCCG CTTGCTGTGC ATTCTCATTC TAGGGAGGAT GGCATAATTT 004800 004801 ATAACCCAGC ACATGGATAG AGGAACTGTA AATTGTAGTC TGGATGTCCC CGGCGCTGTC GACGAAGGAA CTGATGGGCT 004880 004881 AGGTGAAGGC TGAATTATCA ATTTGTCAGG GGGGATATGT TCATTAAATG AAACTGTGAA CGCTTAAACA TGCAAATTAA 004960 004961 TCATGCGAGA AAATATCAGT GCAAGCTCTA TCAATACAAG ATGTTTTACT AAATAGCCAA AAATGGCACT GCCAGTCTCC 005040 005041 TATCTCTGTA TCCACACATA AATTTTTTTG TTTGTTTTTG TGCATTTCAA TAGAGAGAAG TCAAAAGTTA CATTCGAGTA 005120 005121 AATAGGGTAA ATTAAATTCT AAAATTCCCA CTTTAGAATT TAAAAAACAA CTAAGGAGTT TTGATTTTTG GTGATCTCCC 005200 005201 GAGTTTAAAC CTTGAAGGAG CTTTTGCTGT CTTGAAGCCA AACAGCAGCT AGTCAGTAAT CGTTATGGGA AGTCAGGGTA 005280 005281 CCACAGTTGT TGAGATTTCA AGGCCACGTT CACTTCCCTC CCTTGTCTCT TGTGCTTGGA GATTTGGGTG CTACTACAGC 005360 005361 CTCCACAAAG AGACAGTGGG AGGAGCTGAT TGGTCCGTAG GCTTAGAATG TTTACTCTTA TTTGTTTTCA GTGATTTTGT 005440 005441 TTGTGTTAGT TCAAACAGCT GGTCATTAAT GCAGTCCCCA TTTCTAGAGC GAAGTGCTGC TGGACATGAA TGCCCGCCTG 005520 005521 ATTAATGCTG CCCCTCCGAG GGTCCTTCAC CCAGCAGTCA TGCTCGCAGC AGAATAATGT AGCATGATGT GATTGCACTC 005600 005601 TAACAGGATA GTATGTCATT GTGTCACCAA GCAATTGAGG TTATTATGGG GCAGGGCAGA CAGACGGGAC AGTGGGGTTA 005680 005681 CTAGACCGTA GCATTTTTAG AAATACAGGC CTGACCTACT TAGAGTTATT CTCTCTGGCT GGCAGCTGCA TGGTACATAA 005760 005761 AGTCTCCTGA TAGGCTGAGT CTGTTGCTAG GGGGAATTAG CATGAATTTT TCCACACACA GACTCAGTGG CTGAATGATA 005840 005841 AAAGCTGACT GGAATTAAAG AGATTTGGTT TAGTATTATA CAGATTTATG TGCCTCCTTT TCTTTCTCAA GTGCAGAGAA 005920 005921 AGAGTGCAAA ACACAGATTT TGTTTCCATT TGTTCTTTGA CCTTCTTGTT CTCTCCCCCT CCCCTCAAGA TGCATGAGGG 006000 006001 GAGGAGGGCA GGGCAGTTAT GAAATTTTGG TTAATCTCTC ACTGTTGGGG TCACTGAAAC GATGTCGCAA ATTGCAAGAT 006080 006081 ATTTAAGCTT AAAAACTGTT GGGAATGACT AACAGAAGGT TAGATTATTT TTCCTCTTCT GTGCACTAAG CTGTTTTGAA 006160 006161 GTTGGGGCTC ACAGGCAGAA GGAATTTTCC TTGTCTTGGA TGAGACTTTT GACTTGGACT TTTGGGTTAA GGTTATAATG 006240 006241 TCTTCTTGTT TTGTTTCTGT TTTATTTTTG TCTTTTTTTT TCTTAGTTAA TCTAGCTAAT GGTATATGCT AGTCGATTCT 006320 006321 CGCACTGCTA TAATGAAACA CCTGAGGCTG GGTAATTTAT AAAGAAAAGA GGTTTAATTG GCATATGGTT CTGCAGGATT 006400 006401 TACAGAAAGC GTGGTGCTGG CATCTGATCA GCTTCTGGGG TGGCCTCAGG AAGCTTACAA TCATGGTGGC ATTTGAAGTG 006480 006481 GAAGCGAGAG AGAGAAGAGG AGATGCAACA CACTTTTAAA CAAGATTTCA GGAGAACTCA TTCACTATGC CTTGCTTGAT 006560 006561 ATCTGTGCAT TTAATGGAAC ATTCACGTCT TCCAGTTTTG TAGTGTGGCT TTCATGGGAA AAAACTTTCT TCTACAGATA 006640 006641 TGTCCTAGGG TGTCAGTTGG GTAGGGTGCG TTGGCTTTTC TTTGGGTGGG TGCAATAGTG TAGTCTTTGT ACAGTTTCTT 006720 006721 CAGCTATAGT CAACATCAGC AATGCCTGTG TGTGCCTCAA TGGCTTAGGC TGTAGAGATT TGTATGGCTA TTCCACCTAC 006800 006801 TTGGGCTCTG CTCCTCGGGG GGTTGGGTGC TGGGCTGGTC CACGCTTTGG AGAAGTGAGG GGCTGGTAAA TCAGTGGCTT 006880 006881 GAGTCAGCTC AGGCTCTGCT CCTCACATTA AATCTTGAAA GATGTGAATT TCATTACCTC TTAGTTACAT AAAGCCATAT 006960 006961 ACAAACTCTT TGTTGTTTGT TTTAAATCTT ATCTCTGACT TGGTTATAAA TGATTGCACT TTTCTACTAT TTCTAACTAC 007040 007041 AGTATAGCAG TGCTGAAACA TCTGGGGGGC AAAAGAAAGT TAGATAGGCT AGTAACACCA AAGTAATGCT GAAACCTGGA 007120 007121 AGGAAAGAAA ACACATTACT TTCCTCTCCA TTCTTCTTTG CTCCCCTTTG AATATATGCT TATTATAATA GCAAGCTGTG 007200 007201 TGACCTTGAG CCATTTATTT GTCTGGAGCC ACAGCTTCTT TACTTACAAA ATAAAGTTAA TGCCATTTAC ATCTCAGAAA 007280 007281 TTGTGAATAT ACATGAGAAA TATGTTTATA AAATCTCATG ATATGCTTGT CACACAGTAA GGTTTGGTAA AGTGAATCCT 007360 007361 TCAACAGCGT TCCCCAATTC TTTCTCTTGT GCTGAAAGTG GACTATCTAT CTTAGAAAAG ACCATGCAAA CCAAAATAGA 007440 007441 ATGACTTGGC TACAGAGTTC TGGAGACCAG AAGGCCAAAA TCAAAAGTAT GGGCAGGCTT GATTTCTTTA GAAGACTCCA 007520 007521 GCGGAGAACT GTGTCTCCTT GCTTCTGATT CTACATCTCC ATCCATGGGC CACTGTTTCA GCAACCTCAG CCAGTGCAAC 007600 007601 ACAACCTCAG CCAAGAAGAG TATGCAGAGA AAGGAGTCCC CTACCTGCCA CAAAACTGTT GTCTGAAAAC TGTCTCATAT 007680 007681 TGTCTCAAGT TGTCATTCAT TGTGAATTAG ACCTGTTTAA CATGTAATCT GCAACATGCT TCACTGTCTA ATTTTCCAGA 007760 007761 GCCCCTCATA TAAGGAACTG TATTATTGGT ATAATCATCA TGGTGAAGAA GTTGGTATGT GGGGGAGAGA TGACAGAAAC 007840 007841 AGAGAGTAAG TCAGAGCTGG CTGCCTGACA GATAAAAAGG AAATGACCAA AAAAAAAAAC TGCATGTAAG TGGCAAAGAT 007920 007921 GACTGTCTGA AAATATATAC CTACTTTTTT AAAGGGCTAT CTCAAGCCAT TCTGGAGAAG CACCAAAAGC CACTTTGCTT 008000 008001 ATACTGGGAG AATAGTTTGC TTTCCCTAAT TTGTGATGAG TGAAACACTG AACAGAGACA TAGAATAATA TTCTGTAGTT 008080 008081 CAGGGTTGGT GTAATATGGC CAGTGGGCGG AATCTGGTCC TCAGACTGAT TTTGCAAATA ATCTTATAGA AACACAGCAA 008160 008161 CACCCATTCA TTACATGTTG TTTATGGTTG CTTTGGGGTT ACAATGGCAG AGTTGAGTAG TTGTGACAGA GATCACTAGG 008240 008241 CTCACCACAT CTGAGATATG TACTGACTGA CCCTGTACAG AAAGTTTGCT GCTCTTAGAG GAATGTGTGT TTCTAGTGTC 008320 008321 AGCAATAAAC TTCTTGGATT TGTTTTTTTT TTTTTTTTTT TTTTTTGGTA GAGATGGGGT CTTTCTGTGT TGCCTAGGCT 008400 008401 GATCGCAAGC TCCTGGGCTC AAGTGATCCT CCCATCTTGG CTCCCAGACT GCTAGGATTA CAGGCACGAG ACACTGTGCC 008480 008481 CAGGCCCAAA TTCTGTACTT CTCCCAGCTA TTGTGAAGCC TCCGACATGG TCTGTTCTGA TTCTGTCACC TTTCTCTTCC 008560 008561 TTCTCAAGCC CCAGTAGGGG CCTTGCCTCT CCAGCGTACC CTGCTTTTGG AGATCTTGCC TCCATGTTTC CATTATTGAT 008640 008641 GGAGGGACCG TGGCAGGACT TTGCTTTCCA ATGTCACTAT TATGTCAGCA GGCTAGCCCT GAACCCCACA CAGTAAGACC 008720 008721 CCTTATGTGA GGGTTTTACA CCTACTTGAT CTTATTCCTC TTTCCAGGTG AGCACCACAC ACTGACCTAG CTAGGCTCAG 008800 008801 GGTAAGGTAG CTCTTGCTCA TTTTGGCCAG GTATTTAATT ACGTGACATT CACAGTGTGC CTTTCTACTT ATCTTTTTAT 008880 008881 CCTTTTCAGT TCAAGAAACG TGGCTATACC AACTTGCCAC AGTGCCCATC CCACTTTGTA GAAGACTTTG ATATCTGACT 008960 008961 CACAGAGAAA CTCCTGCCAG GAGTTTATAT TGTGTGCAGC TGATTCAGGC AGTAACTTCC ACTCAGCGAG GGGGTCCATT 009040 009041 TACAAAAA |
Predicted Small Protein
Name | NONHSAT108047_smProtein_5264:5524 |
Length | 87 |
Molecular weight | 9421.6184 |
Aromaticity | 0.116279069767 |
Instability index | 65.2686046512 |
Isoelectric point | 5.14361572266 |
Runs | 15 |
Runs residual | 0.034796945505 |
Runs probability | 0.0495672142732 |
Amino acid sequence | MGSQGTTVVEISRPRSLPSLVSCAWRFGCYYSLHKETVGGADWSVGLECLLLFVFSDFVC VSSNSWSLMQSPFLERSAAGHECPPD |
Secondary structure | LLLLLEEEEEELLLLLLLLHHHHHHHLLEEEEELLLEELLLLLLLLEEEEEEEEEEEEEE EELLLHHHHLLLHHHLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHH HHHHHLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTT TTTTTooooooooooooooooooooo |