NONHSAT108118
Revision as of 01:46, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT108118 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
714 nt |
Genomic location |
chr6-:24666215..24667014 |
Exon number |
2 |
Exons |
24666215..24666839,24666926..24667014 |
Genome context |
|
Sequence |
000001 GACTTCTGTG TGTGGAGTTT GCCTCGGTCG CAAGCTGCGA TGCCGCAGTG GCTCAGTGCT TCCTGGCCGA GAACGACTGG 000080
000081 GAGATGGAAA GGGCTCTGAA CTCCTACTTC GAGCCTCCGG TGGAGGAGAG CGCCTTGGAA CGCCGACCTG AAACCATCTC 000160 000161 TGAGCCCAAG ACCTAGTAAG TGATGAGGGG AGCGGGAGCC AGTCCGCACG GAGGCAGTTT GATACCAGGT AGCCCTGCGC 000240 000241 GTCCTGGGAC CTGCCGTGGA GCTGGGCGGA CGATGCTGAG GCAGATCTCC AAGCTGCGTA GCCAGAGGAG CAGGGCTTGC 000320 000321 GTTGCTGCTG CTGCGCGGAG TTGCGCCCCA GCAGCGGATC TAACACTGCA CCAGACTGTC GCTTCGAACG TGATTTGGGG 000400 000401 TCCAGGGAGG AAAAGATGGA AATGTAATGT TTAACTCAAA TGAAAGGAAA TAAGTAAGCG AGAGGTTTGA AACAAATGAA 000480 000481 CGAAGGCTAA ACCTTCTATC GAAAAATGGC AACTTGGAAG TCTCCTTGCT TCCTGTATTG TTTATTTATT CTAGGCCCTA 000560 000561 GGCTGACCGG CCAGAATAAC AGGTTTGTTG TTGTTGTTAT TTTTTTTTAA TGCACACCTA CTCCTGTTAT TTCAGTGCCC 000640 000641 CTCTCCAGTT CCTGCACTTA AAAAGTGTAG CTGCCTTACA AGGCCCTCTA CTATTTGGCT CCATAACTTA GAAC |
Predicted Small Protein
Name | NONHSAT108118_smProtein_182:433 |
Length | 84 |
Molecular weight | 8649.9528 |
Aromaticity | 0.0240963855422 |
Instability index | 65.9253012048 |
Isoelectric point | 11.9271850586 |
Runs | 11 |
Runs residual | 0.00749665327979 |
Runs probability | 0.0403317756259 |
Amino acid sequence | MRGAGASPHGGSLIPGSPARPGTCRGAGRTMLRQISKLRSQRSRACVAAAARSCAPAADL TLHQTVASNVIWGPGRKRWKCNV |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHLLLLHHHHHHHHHLLLLLLLL LLLLEELLLEEELLLLEEEEELL |
PRMN | - |
PiMo | - |