NONHSAT108254
Revision as of 01:47, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT108254 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2324 nt |
Genomic location |
chr6+:26296251..26298574 |
Exon number |
1 |
Exons |
26296251..26298574 |
Genome context |
|
Sequence |
000001 ctacttgatt tatcacaggc tcacatgatt gctttctttg ttcaacagac tccagatgtt cctatagata accttaagga 000080
000081 acacggtgcc tgggacgtgg ttgccctcag cattccttct ggtgacagat gcagttgtca gtttgccaac atcctgcttt 000160 000161 catgagaaca gtttgctgtt tgctcatata ccctccagtg gtatattgag ttggtcacgt ccctcattcc tttggcctcc 000240 000241 aacaGGTGAA GGCTAAAGAA GGCTTTCTCA TCCAACGTCT TCACTGAGGA TAGGAAAGCC CTTTCTCTCC AATTGTGAAC 000320 000321 TGCACGCATG TGTGTAAGCT ATGCTTGCAT AGCAAAGTCC ACTTGGGCAT TAGAGTCAAA GTTGTTAAGG GGAGCTAGTC 000400 000401 ATAGCTACCA CGTGGCCAGG CATGTGGAAC CAGACACCAG GCACACATCA TGAATCATCA TATTTACTTT AAATAATGCT 000480 000481 GACAACCTAG TTCATAGTGA CACACTACTT GAGATATATA GAATAACATT ATTACCCAGT AAGTATGTGA ACATTCCGAT 000560 000561 ATTTTAGTAA GGGTCATCAC CATGGCACTT ATCTACAGAG ATAAATGAAA ACTAAAACAG GGTTGCTGCA TTAATTTTGC 000640 000641 CCTGGCAATT GTCTGATTCT GAAATggtgg caggttttga gccaaaactt gaatgagtaa gaacttgcca tatagccgag 000720 000721 aagagcactc tagcaaaaag aaataaatat aaggaagcat aatagttaaa ggtttttaag gaactacaaa taattcagtg 000800 000801 tgatgaagta tggaggtgag gtcatgtgag ggagagggat ttggagagaa aagtggCTGt gttccgatca cctcctgtgc 000880 000881 acctgttgaa agacaataaa ttctcctgcc ctaaatagta agaaggctgg acacatgacc tcaacactga ataaatgaga 000960 000961 ctggcagaaa tttattagtc atatgtactc acagcctgga aaaaagaggg cactgcatac cgtgcaaggc cacagaaggt 001040 001041 ttgcactcag gaacagaatg aaccattagg ggctgtgaga ggtaggcttt gtagtcatca gagggttggg tgactcctgg 001120 001121 ttccctccag agaatgtagt tggcttgctt taacagtttt agggactggc agtgagacga aacccattag gttgaggcct 001200 001201 gagtgagatg cagctggtct gtcagataag ggaactggac aagtagggaa cctttcctgc ttgtgggagt catagctatc 001280 001281 aagacagggg aatttgtgga taagcatttt tggggagctc tgtgagggtc aaaaatctca aggcagcagt tgaaatttta 001360 001361 ggtcttacaA TACCTAAAAT TGGTTTGGAG TTATGGCAGA ACAAAAAGGG AAAGAACAGG TCATAAGGGC GTGAGTATAC 001440 001441 AAGGCAAACA CTTGGATTTT ATTTTTCAGT GGGCAATAGG AAACCACTGA CCAATTGTGA GCAAAGAATA TTATTCCAGT 001520 001521 TCTCTTCTGA GAAAAAAAAG TCTCTGTCCC ATTCCAGGAG GTGCAGcaat caatcaatca atcaatAAGG GGGGAAATAA 001600 001601 AGGAAAAAAG TCTTTAGAGT TTTCATGTTT ATGATCTGGT CCTTGATTGG TTTATTTTTC AGCAAGTCAC TTCTTTTCTA 001680 001681 ACTTGGGAAA GGGAAAGTTT GGGACTGTAT ATATTTATTT AAATCTGACC actccacact agtcatctcc acttgaatgt 001760 001761 tcaatacaca acttgaagta aatgctgaaa cagattctag atccccacca cacacataca cactccactc tcaaaatgct 001840 001841 ctttctgaag tcattcctgt ctcagtaaat gcaaactgtg ttgttacagc aaaagaaact ggagatatat atgacttttc 001920 001921 tatttatttc acaccaattt aatcacaaac cctttaaaac atacccagaa ttcaaccact ccttgatact tctacaaaca 002000 002001 ctacccataa tggtttatgg gtcatccaga tattataata gcctttcaat caatcttcTC CAGGAAGGAG AAAGAGAGAG 002080 002081 CAACAAAGAT TTTTGCAGAA TAGAAGAATA TTGTTAAATA ATTATCACAT Tggccgggcg tggtggctca cgcctgtaat 002160 002161 cccagtactt tgagaggtca aggtgggagg atcagctcag gtcaggagtt cgagaccaac ctggccaaca tagtgaaacc 002240 002241 ccgtctctac taaaaataca aaaattagcc aggcattggt ggtgggcgcc tgtaatccca gctacttggg aggctgaggc 002320 002321 agga |
Predicted Small Protein
Name | NONHSAT108254_smProtein_1868:2116 |
Length | 83 |
Molecular weight | 9900.3273 |
Aromaticity | 0.146341463415 |
Instability index | 59.3548780488 |
Isoelectric point | 6.81488037109 |
Runs | 13 |
Runs residual | 0.0226348854398 |
Runs probability | 0.033664886606 |
Amino acid sequence | MQTVLLQQKKLEIYMTFLFISHQFNHKPFKTYPEFNHSLILLQTLPIMVYGSSRYYNSLS INLLQEGERESNKDFCRIEEYC |
Secondary structure | LLEEHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLHHHHHHHHLLLEEEELLLLEEHHHH HHHHHLLLLLLLLLLEEEEEEL |
PRMN | - |
PiMo | - |