NONHSAT108329
Revision as of 01:47, 17 October 2014 by 124.16.129.48 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT108329 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
876 nt |
Genomic location |
chr6-:27001214..27002089 |
Exon number |
1 |
Exons |
27001214..27002089 |
Genome context |
|
Sequence |
000001 TTCCTTTTCC TTACTGGACC TGGATTTGTG GGAAACTTCC TTATATTTAT AAGACATGTA TATTCTTTTG TCATGAGTTC 000080
000081 TGAGAAAAAG CACATAGAAC TTATCCTTCT TCATTTGGTT TTCTCAAATG TAATCATTAT TTATAGCATA AGTAGCAGAA 000160 000161 ATATAACTGC AGTTTTTAAT TTCAGAAACT TCCTAGGTAA TGTTGGTTGT AAAACTTCAG TTTATTTAGG GAGGGTTGCT 000240 000241 TGGGGCCTTT CCATCTGCAC CACCTGTCTC CTCAGCATGG TCCAGGCCAT CACCATCAGT CCCAGGACCA CCTTGTGGAG 000320 000321 AAAGCTCAAA CTACGGATTG CATGGCAAGT TCTTCCTTAT CTCTTCCTCT TTTGGATCTT TAATGTTCTG ATAAGCTCCA 000400 000401 ACTTGCTCTA CTACATTAGA GCAGTTAATA GCATGAATAG GTCTGAAATT AGACCACATA TTAGTTGTTG CTATATGCTA 000480 000481 CCATCTAAGC AAATAGTTAG GTGGTTTTTC TCACTCTTAT GGCTCTTTGG GATATCATCT TTCAGAGTCT CATGGGCTGG 000560 000561 AGCAGTGGGT ACGTGGCTTA TCATCTGTAT AAATATCACA ATTGTGTCTC CTACCTTCAG AGCTCCAGGT TTGCAAATAA 000640 000641 TTCCAGCCCA GAGGTCAGAG CTACTTAAAG TACTTTCATT CTCATGACCT GTTTCCTTTT CTTTTATTGG GCTGATTTTA 000720 000721 TTTTCTCCTT CTATATAGGT TCCATCTTGA CAAATGATTC TGCTGTATTA ATTATTAAAC CATTTCTAAT GTTTGGTTAT 000800 000801 GCCAGTCTCA GCCCCTTTGT GCTGATCAGC AGAGATGTCT GCATTGCTAA ATGCTGGAGT GCTCACCTAG GAAACT |
Predicted Small Protein
Name | NONHSAT108329_smProtein_518:667 |
Length | 50 |
Molecular weight | 5693.3638 |
Aromaticity | 0.183673469388 |
Instability index | 78.5 |
Isoelectric point | 7.92742919922 |
Runs | 9 |
Runs residual | 0.0216216216216 |
Runs probability | 0.0350546625057 |
Amino acid sequence | MALWDIIFQSLMGWSSGYVAYHLYKYHNCVSYLQSSRFANNSSPEVRAT |
Secondary structure | LHHHHHHHHHHLLLLHHHHHHHHHHHLLHHHHHHLLLLLLLLLLEEELL |
PRMN | - |
PiMo | - |