NONHSAT112888
Revision as of 01:52, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT112888 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
720 nt |
Genomic location |
chr6+:43350113..43350832 |
Exon number |
1 |
Exons |
43350113..43350832 |
Genome context |
|
Sequence |
000001 atcctcccac ccctcagcct cccaagtagc tgagactata ggtatatgcc accacaccct gctaattttt tgtacttttt 000080
000081 gttgggactg gattttgcca tgttccccag gctggtcttg aactcctggg cccaagagat tcccttgcct cagcctccca 000160 000161 aagtgccggg gttacaggtg tgagctacca cgcccagccA CAAGTGTAAC TGTAATAGGT ACCACCTCAC CTATATATCT 000240 000241 CATCCCCACC CTTGTATATT TTTGGTTATG AGAGAAATGC TCCACATCGT TGGTCACTAT TTCAGAGCTT ATGTCACATT 000320 000321 CTGTAGGATA CCACTCTAAT Cttttttttt ctttctttct ttgagacaga gttttgctct tgtcacccag gctggagtac 000400 000401 aatggtgcga ttgcggctca ctgcaacctc cagctcctgg gttcaagcta ttcttctgcc tcagcctccc gagtggctgg 000480 000481 gattacgggc atgtgccaaa cacgcttggc taattttgtg tttttagtag agatggggtt tcaccatgtt ggtcaggctg 000560 000561 gtctcgaact cctgacctca agtgatccac ccgccttggc ctcccaaagt gctgggatta caggcgtgag ccaccgtacc 000640 000641 cggcTGATAC CGCTATGATC TTATGAGATG TTGTCTCCAG TTGGCAAAAT AAAAACTAAG ACCTCAGTAA GCCTATTCTA 000720 |
Predicted Small Protein
Name | NONHSAT112888_smProtein_401:526 |
Length | 42 |
Molecular weight | 4677.6058 |
Aromaticity | 0.0975609756098 |
Instability index | 71.9707317073 |
Isoelectric point | 9.68829345703 |
Runs | 7 |
Runs residual | 0.00523716893611 |
Runs probability | 0.0203018144195 |
Amino acid sequence | MVRLRLTATSSSWVQAILLPQPPEWLGLRACAKHAWLILCF |
Secondary structure | LEEEEEELLLHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHL |
PRMN | - |
PiMo | - |