NONHSAT113064
Revision as of 01:53, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT113064 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1773 nt |
Genomic location |
chr6-:49783206..49792479 |
Exon number |
5 |
Exons |
49783206..49784519,49786119..49786158,49791425..49791543,49791649..49791756,49792323..49792479 |
Genome context |
|
Sequence |
000001 GGGGGTGTTA CCCAGGCCGG AGTGCAGTGA CTACTTACAG GCACGATCAT AGTGCACTAG AGCCTTGAAC TCCCGGGCTC 000080
000081 CAGTATTACT CCTGCCTCAG CCTCCTGAGT ATCTGGGACT ATAGGAGTGC ACCACCATTC CTGGCATAAT CCTCTTTTTA 000160 000161 TGTTGAGTTG AAGAAAGTCA CAAGACGTGA GACGCTTTAT GTTGCAGTTA ATGGTCTCTT CCTCCCTTTT CTCTGTTCCT 000240 000241 GCAAATGGAC AATTATTCCT TCTCACAAGG TTTTTGGCTT CCCACTTCAG CATGCCTCCA GCAGTGTTCT AAAATTACTC 000320 000321 TACAATTGCC AAAGTAAGAG CAGCAGATGC TCTAAATCTA TTTCCAGGAC ACCCGTCTCA TGATCAAGGA CAAATGGGGT 000400 000401 CCAAACTCCT TGGCTGCCAG ATGAGCAAAA CTGGAGTAAA GATGCTGCGC AAAAGGCCAA AATGATGTCA AAGCAGTGTA 000480 000481 AACTGATACA GATCAAAGAA CAGGAGTGGA AAATTGCAAG CAGGGATATG TAGCGGCTCT GTATGGCCCA ATGTGCTCAA 000560 000561 ACTCTCCAGA GGTTGTTAAT TTCCTGGCAA GATGAAGTTA CATCATACAG TCTGTATTTG CATATGTACC CATACTTGAC 000640 000641 AGTGAAATAT GGTCTAATAC ACAGGTTTTA TTATTATTAT TATTTAATTT GAATATTCAC ATTTATAGGT TCCAAATTCA 000720 000721 GGTCACCAAG GATAAGGGAA TCAAAGCTCT AAAAATTATA GAATATTTGA GCAATGCAAT AATGACTGGA CAGGCAGCTA 000800 000801 GATGCTTAGA TGGTTTCCAC TCAATGCAGT TGTCTCAGCT ACCCACAATA TATTACCGCT AGGATTTCTT TAGCTTTAGG 000880 000881 AATTGTCGAT AGGCAATTCT TCTGATCTGC CCATAAGAAC ATTTTTAAGG GGTCAAAGGT GAGCCCATCT CATGGCAATA 000960 000961 CGATAACCAT GTAAATTAGG TTCACTGCTA GTTTTCAGAA AAGTCATTAG TACTTTCTAC ACAAGTGGAT ATTAAAAATA 001040 001041 TCTACAAGAA TATTTTATTA TAAAATAATA AAAAGTACTA ATGGGACTTC TATATCTATA GATTATTGGT AATCTTTGAG 001120 001121 CAATATCATT GACAAATTAA TTTTCAGTAG CAAAACTGAA TAAAACTAAG CTCTTTTAGC TATTCTCCAA AACTCTTATG 001200 001201 ACAAAAGGAT TCCACCATAT TGTACGCTTT AGCATTTGTA ACTCGTCAAG AATTGTTTTT ATTTCTCAAG TGTACTACTT 001280 001281 GTATATAGAC ACATATATGA CCTTATTTTA TCACACATCC ACCTTAAAAA TACATAGCAA GTAAAAGTAG CTCTTAAAGA 001360 001361 AAGTAGCTCT TAAAAGTAGC TCTTTAGAAA GCAACATTGG GTGCAGGAAC TAAGAGGACT GGCTGGTGCT TTTCATCAGT 001440 001441 AGTAGGTGGT GGTGGCTAAG GTTTCCACTG TGGGCACAGC CCAACACAGC CCTACCAAAC TGACTCTGCA GATCACCAAA 001520 001521 TGGCTAACAT TACACTGAAA AGTGTAGGGA AAATATTGAT TTGTTTATTT TCTATGAATT GAGCTAACTT TCCTCACTAG 001600 001601 TCTTGTTGTT AAATAGTGGA GAAAAAAAAT TTGAAAAAAA AATAAAATAA ATTTGAATTC AATGGAGCAA ATTTGGTCTA 001680 001681 ATGCAGTACA ATACTTTTTA AAATCTGTCT TTGCAAATTA AAATAAAATA CTGTTATCTT GCAAAAAAAA AAAAAAAAAA 001760 001761 AAAAAAAAAA AAA |
Predicted Small Protein
Name | NONHSAT113064_smProtein_542:691 |
Length | 50 |
Molecular weight | 6124.0679 |
Aromaticity | 0.244897959184 |
Instability index | 43.902244898 |
Isoelectric point | 7.86175537109 |
Runs | 7 |
Runs residual | 0.019194704909 |
Runs probability | 0.0251848487143 |
Amino acid sequence | MAQCAQTLQRLLISWQDEVTSYSLYLHMYPYLTVKYGLIHRFYYYYYLI |
Secondary structure | LHHHHHHHHHHHHHHHHHHHHHHHHHHHLLEEEEELLLEEEEEEEEEEL |
PRMN | - |
PiMo | - |