NONHSAT113544
Revision as of 01:55, 17 October 2014 by 124.16.129.48 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT113544 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1444 nt |
Genomic location |
chr6-:73983862..74020088 |
Exon number |
5 |
Exons |
73983862..73984877,73985132..73985279,74001721..74001763,74019275..74019451,74020029..74020088 |
Genome context |
|
Sequence |
000001 CTTGGACCGC AGGGAGGGCA ACCAAATGGC AGAGGCGGTA ACGGAGAGCA TCCCTGAACG GCCAGAAACG CGAAATGCTG 000080
000081 TCGGCCTTCC AGAGGCTGTT CCGAGTCTTA TTTGTGATTG AAACAGTCTC AGAATACGGA GTCCTGATCT TCATTTATGG 000160 000161 ATGGCCCTTT CTCCAGACCC TTGCGATGCT CCTGATCGGG ACAGTGTCTT TCCACCTTTG GATCCGCAGA AATCGAGAGA 000240 000241 GAAACTCAAG GAGCGGAAAG ACTAGATGCC GATCCAAAAG GTGACCAGCC ACCAAGTAAA GCACTGATGG TTTCAGAATG 000320 000321 TGCCTAAACC TGCACCAGTG AGGCAAGTAT GCAAAAGGAG TCCCTTTCCG GGATGGACAC ACTTCCCATA GAGCCGTGTC 000400 000401 ACCCCGCACA GGGTTGCAAC CAGGCTGGTC TCAAATTCCC AACCTCAGGT GATCTGCCCG CCTGGGCCTC CCAAAGTGTT 000480 000481 GGGATTACAG GCATGAGCCA CTGCACCCGG CCTCAGACTG GGATCTGAAA TTAGAGAGAA TCCCTTGTGG ACTGGGGACA 000560 000561 GGACAAGACT GCTCTAGATT GGCCCATGGT GCCAGGTTAG TTCCTTCTGT AAGCTCCACC TCCTCCAGGG GCACCCGCTA 000640 000641 ATTGGCTCCC TCAGATCCTG GCTAGCCAGT ACAAGGCCTC AGCAGTGCAC AGATCCCATC TCCAGCCAGT CCAGGTGGCG 000720 000721 CTCGCATGGT AGGGTGCATG AACCTGTGTT GGAGTACAGG CCTTCTTTGC TCCAGTTGTT TCCCAATAAT AAATGTTATA 000800 000801 AAATTATCAA AGGCACTGTA TTAGTCTGTT ATGCTGCTAC ACGAGACTGG GTACCTTACA AAGAAAAGAG GTTTAATTGA 000880 000881 CTCACAGTTC CACATTGCTG CGGAGACCTC AGGAAACTTA CAATCATGGC GGAAGGCACC TTTTCACAAG GTGGTAGGAG 000960 000961 AATGAATGAG CGCCAGTAGG GGAAATGCCA GACGCTTATA AAACCATCAG ATGTCGTGAG AGTCACTCAT CACGAGAACA 001040 001041 GCATGGGGGA AACTGCCCCC ATGATCCGAT TACTTCCACC TGGTCTTGCC CTTTACATGT GGGGATTATT ACAATTCAAG 001120 001121 GTGAGATCTG GGTGGGGACA CAGAGCCAAA CCATATAAGG CACACTGCTC ACCAACATTA GGTAGAGTTC ATACATTTCT 001200 001201 TTCTCTCAGC AATGGACAAT GGATACATTA GAATGAGGAT GATTGCTGCA ATGCTAACCA GCTAATAAAT AGAAGTGGAC 001280 001281 TGGGATGAGA GTCCAGGCAA TTGCCTAATG AGCCCCGCTA TACATATTTG CAAAAATGTA GAATGATGCC ATTCTTTTTT 001360 001361 GTTTTGGCAA ATAGTTATTT TTCATTAAAA ATGTAATGTT ATGTTAATAT TGGATAAAAA TTGATTTAAT AAAAATGTTA 001440 001441 TAAC |
Predicted Small Protein
Name | NONHSAT113544_smProtein_74:283 |
Length | 70 |
Molecular weight | 8266.7227 |
Aromaticity | 0.144927536232 |
Instability index | 58.9594202899 |
Isoelectric point | 11.6504516602 |
Runs | 12 |
Runs residual | 0.0345817190415 |
Runs probability | 0.0694812459519 |
Amino acid sequence | MLSAFQRLFRVLFVIETVSEYGVLIFIYGWPFLQTLAMLLIGTVSFHLWIRRNRERNSRS GKTRCRSKR |
Secondary structure | LHHHHHHHHHEEEEEEEELLLLEEEEELLLHHHHHHHHHHHLLEEEEEEEEELLLLLLLL LLEEEEELL |
PRMN | LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLL LLLLLLLLL |
PiMo | oooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiii iiiiiiiii |