NONHSAT115335
Revision as of 02:03, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT115335 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4093 nt |
Genomic location |
chr6+:143358752..143362819 |
Exon number |
1 |
Exons |
143358752..143362819 |
Genome context |
|
Sequence |
000001 AGCTGCCAGT CTCATTGTTG CTCTTTTGTA GATAATGTGT CTTTTTTCTT CTGGCTGGTT TTTCCATCTT CTCTGTCTTT 000080
000081 GGTTCAGCAG TTTTATTGTG AGTTGCATAA TTGTGGTTTT CTCTATACTT ATCCTGCTTG AGGGTTTGCT GAGCTTCTTA 000160 000161 ACCAGTGGGT TAAATGTATT TTATCTGCTT TAGAAAATTC CCAACCATTA TCCCTTTGAA TATTGCTTCT GCTCTATTTC 000240 000241 TTTCTCCTTG CCCTCTGAAA CTTCAGTTTT ACATGGTAGA CCTTTCATAC TTGTCCTGTA TGTCTCTTAC ATTTGTTTCT 000320 000321 TATTTTTTCT CTTTCTTTTT TTCTTCCATG CTTCACTTTG TATATTTTTC ATTGATATGT TTCCAGTTCA CAAGTCTTGT 000400 000401 ATTCAATAGT GTCCAACCTA TTGTTAAACT CATATATTGA GTTTTTAAAT TTAATTTTGA AATAATTTAC TTTGAAATAT 000480 000481 TTTTATCAGA AAAGTTGCAA GAACAGTAGA ATGAACTCCC ACATTCTCTT CATCCAGATT CCTCAGTTAA TAGTTTCATA 000560 000561 TTTTCTCCAT CTCTTTTTGT AAAGATGATA GATAGATAGA TAGATAGATA GATAGATAGA TAGATAGATA GATAGATAGA 000640 000641 TGTGTATTTT CAAGGATATG ATACCTTTTT TGAATATTTT GAGAGCAAGT TAAGCAAGTT GAAACCTTTA TGTCCTATCA 000720 000721 TCTGTAAATA TTCCTATTAC TACTTCTCCC AAAGACACTC TCCTACAGAG TAATTGCCAA GCCTTTCAAA TCAGAAAATG 000800 000801 GACAGCGATA AATACCAGCA TTCAAACCAC AGTTCATTAT TATCCAACGT TCCAGGCTTA TCTTGAAATT TCTCTACCTC 000880 000881 CATCCTTGAA TCATCCACTT TTACAAGGAG TCCTTGTTGT TTGTTATGGA AATTGGAACC TACATACTTG TTATTAATTG 000960 000961 CTACTGGGGT GTCATTGCAC CTAGGTCCTC TCCATGGTCA GAATTTTGAA ATATATGTAT GTATTCATGG ATATGTACAC 001040 001041 AGACATATTC ACTTGCATTG ATAATTTTTT TTGTTTCTTT CCTCCCTTCC CTTTCACTCT TTCCTTCTTT CCTTCCTTTT 001120 001121 GCTCTTTCCT TCCTTCCTTC TTCCTTCTTA CCATAACAAT AGCAATGAGT TATTTTTTTC GCTTCCCCTT TTCATATTTG 001200 001201 TAAATTTGTT TTCCCACAGA GAGAAATCCA GCTTCCATTA GCTTCAATAT AGATACTTTC TTGATCAATC CTCCTTTACA 001280 001281 TAATTAATTT CCTAAAAATG CTAGGTACTG CCATGGCCAA CTCATCACTC CTGATTTCAT CTCCAGGCAA GTTGTCACTT 001360 001361 TTGAACTCTT CTCCCCACCA AACCCTGGTC TGTTTGATAT GCCACTGCCT CCATGCCCCT GTCTCCACCT TCTGGCTGTT 001440 001441 AGACACATTG TTAACTGTGC ACCCCAACTT ACTCTTACCT TCACCTCCCT GGTGCTTCTT CTGCTGAGCA TACAACTGCC 001520 001521 ACCATATGTA CCCCCTATAC ATGCTTCCTT GGACACCAGG CACTCTGCTG CCTCCACATG GCTTTCCCAT TATGACTTCT 001600 001601 TTTGCCCCTA TGCACATCAC TATCTGTATG CCCGCCACCC TACTTTCTTG GCTGTTGGAC ACACTGCTAT CTCTACTGAT 001680 001681 CCTTTCCACT GCAGTTTTCT CCATATATTG ATTTCTTAAC TGACGATAGT ATATTTTTTC AAATTTAGAA TGCCTAAAGA 001760 001761 AATCTTTTTT ATAGGTTAGT TTTACTGAAA ATTGTCCATT TCCTCATCAA TTTTGCACTT TATTTTCTTA AACATATTCA 001840 001841 TAAAAATTAT TTGTAAATTC TCATTTGCTG ATTACAATAT CTTGATCATC TATAATTGTG TTTCTATTGT GTGTGTTTTT 001920 001921 TTCTCTTGAT TATTGGGCAA ATGAACTTGA TCTTCCACAT CTAGTAATTT AAAAAATGTT AGACATTATG TATAATAAAA 002000 002001 CCATAAAGGG TCCAGATGAT ATTGCCTTCC ACCGAAAGTG TTCCCTTTTT CTTCTGTTGG GCAGGTAGAA TAGCCTTTGA 002080 002081 TCACCTCAAT CGAGTCAGAG ATTATTCTGA ATCAGAAGCT GGTTTCAGTT TTGCTAAGTG TACCTCCGAT TCACTTCTGT 002160 002161 TCTTAGGGTG TAGCCCTCCA GGGCTTTCAA TTGAGAGCCT GGTGGATCTC TGTCTTCCAG CCCTAAAAGA TAACAGCAAG 002240 002241 TTTTCAGTTT AGCTCTTTAA CCTCCTGCTC CATAAAGCTT CAAAATTCAG CAACTCGCTT GAAAGGAAGA CTGGCAATGT 002320 002321 GTTTGGGACA CTCTATAGTC TTCTGTGAAG AATAGAGATC TCTTTTGTTG TTTTCTTTGA GGGACAGCCT GTAGCTTTGC 002400 002401 TCAGAATCTG TAAATATTCC CATCAAAAAA CCACCTGTAA ATTACCAATG TCAATTCCCT ACTCCCTCTT ATGTTTTTAT 002480 002481 ATTTTACTTC TTTTGTTTTG GGGCTCCTCT TTTCCATAGC AGTTCGTTGA TTCTCTAGCA CCATGACACT GTGGGGGACT 002560 002561 TCACTTTGCA TTTCAGAAGT TTGGGGACTA CTGTTTTAGC CTCCATACAG TCTCAGAATT CAGTTAATGT CTTAATCATG 002640 002641 TATTTAGGGT TTCTCACACC TTCAGTGAGT CACCAAAGCC CCATATAACT GCTAAAAGTT TTGTTAGTTT AACTTTTTTC 002720 002721 CGCAGCTGCA TCTTTCTGCC TGGACTCAGC CTCATCCTTA GCCTGCACTC CAACCTGGCA ATTTTGCCAA GAGGAAAAAA 002800 002801 TTGTGGACAT CATCAAGTCA TTACTGGAAA GTTCTCACTT CTCTGGAATT TTAATCCATT TAGTTCTTGT TTTTAAAACC 002880 002881 CTCTGATTCC TTTATAAATA TATAATTTAC CTAGGTTTTT CTCGTTGTTA GTCCAAGTGT TGGCCTGCCA CACTGACTAT 002960 002961 ATCCTTTCTG GAAATAGAAA TTCTCTCTGT TGCCCTTAAT GAATTTAAAA AAATATTTTA TACCACTTTA TCGTTTATTC 003040 003041 TTAGTCCAAA ACATGTTTTC TACCATTGTT GGAAGCAGAA GTTCTGGAAT TGGTTTCTAT ATATTTTCAG ATCCCGTAAA 003120 003121 AATGAATTAA GGTGAATTTG ATTAATGTAA ATTAGATTTA TGTGAATAAA GGATAAATAG TTAAGTTCAT CATTGTTGCA 003200 003201 ATTAGAGAAG TGGTACAGGT TCCCCATTCT AGCACTGAGT ATTTGAAATC ATACCTCTGC TAAGATCCTG CAAATATTTC 003280 003281 AGCTCACTCC CTGTGTGCAT TGACACATAT TATCAGCCCT CTCTTTTCTT ATATTAAACA GGGCCACAAG ATGCAACACA 003360 003361 CGCTTTCTCA TTGCTTCACA ATTTTTTCTT CTTTCACTTT CATTCAGTCA CTTCATATCA GCTATGTGTT AAGCATAGGA 003440 003441 GATTTGTCAG TGAAAAAAGT ATCAAACTCC TCATCTTTAT GGAGATTACA TTGTAGTAGG AAGAGACAAA CAATAAACAA 003520 003521 GAGCAATAAC ACGCTTCATA GTAGACATAT AATTCCAAGC ATGTGTACCT ATTAGTCTTA AATACAGGAG AGACACTCAA 003600 003601 GACAGAAATA AAATGTAATA AAATCCAAAC CCTACAGTCT GCAGGGGACT TGGACAAGAC CCCAAGATTC TTCAAGGATA 003680 003681 GGATAGGGGG GGACAACCTG TAACAATTAA TGAAGGTGTA GTATTCAGCT CTTCTATTTC TACTGATAAA GTTCTTTCTC 003760 003761 CATACATTAT AAAACTTAGA TTGTTATTGT TTTAAATTGG GAAGGTTGAA AATGTTGTGA TGTACAGGAA TAAGGAAAAT 003840 003841 GAATTCTTAC GGTCTGTATA TCTTGGTTTA AAAAATGTAT GCCCTGGAGT TAAGTTTCAG GTGCCATTTT CCCCTCTCCT 003920 003921 ATGAGTCTAT CCCATACAAA TGTTGTAACA TCTCCCCAGT TTCTACTGGT TAGATCAGTA TTTGTTTTTG TTTCCAGAAT 004000 004001 TTTCTGATTT CTTGCTGATC CATGAAATAG GAACTTCTTC TTACCTTCTG AAAATATTAA AAGGAGACTT ACACCCCAAA 004080 004081 AAAAAAAAAA AAA |
Predicted Small Protein
Name | NONHSAT115335_smProtein_173:439 |
Length | 89 |
Molecular weight | 10415.4645 |
Aromaticity | 0.25 |
Instability index | 46.6978409091 |
Isoelectric point | 8.78057861328 |
Runs | 14 |
Runs residual | 0.0277272727273 |
Runs probability | 0.0499470058294 |
Amino acid sequence | MYFICFRKFPTIIPLNIASALFLSPCPLKLQFYMVDLSYLSCMSLTFVSYFFSFFFSSML HFVYFSLICFQFTSLVFNSVQPIVKLIY |
Secondary structure | LEEEEELLLLLEELHHHHHHHHLLLLLLLEEEEEEELLHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHLHHHHHHEEL |
PRMN | LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLHHHHHHHHHHHHHHHHHH HHHHHHHLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTToooooTTTTTTTTTTTTTTTTTT TTTTTTTiiiiiiiiiiiiiiiiiiiii |