NONHSAT115498
Revision as of 02:04, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT115498 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
2039 nt |
Genomic location |
chr6+:149704969..149707007 |
Exon number |
1 |
Exons |
149704969..149707007 |
Genome context |
|
Sequence |
000001 TCAGACTCCC AAAGTGCTGG GGTTACAGAC GTGAGCCACC GCACCTAGCT CAGTGACACA ATCTTGATCT AGTGTTTCAT 000080
000081 TCACTTAATT CAAGACAAAG GAGGCCTTTG CTGGAAAATG CATCTTTTCT GCTTTTACCC TACATAGTTC ACAGACACTC 000160 000161 TCTGCAGTTA CTAAACGGGG TGGCCTGAGT AATCCTGATC TTTAAGCAAG GATCTTTTCT AAACTCTGAG TGGTATGGGT 000240 000241 AAGAAAAAGA AAAGAAATAT CTCGGTCTTC TGCAGTGAAA TTGATTTTTC TAATGCTCCT GGAAATACTG TTTTAGAGTA 000320 000321 GAAAAATAAG TGGAGCCAGG CACTAGAATC ATAGGAAAAT ACTTTTTCCA AATTGAGAAG GGAACATACG TACATACATA 000400 000401 AATTTGGTAA CCAAAATGCA TTTTTTCTTT TTTCTTTTAA TCTACCATTT GAAATCTAAA ATACTGTGAT AAAAACTGTC 000480 000481 AAAAGTGAAA ATTTGTTTAT GAAAGGTATA TTGTTTAATA CATCCTCTAC TATAGAGTGA TCAGAAGCAA AAGAAGTAAA 000560 000561 TTAATGAAAC ATCAAGACCC CACTCATCTC AGCACTAAGT CTGTCAGCAC CACCATCCTT CCTAAAGGAA ATAAATTAAA 000640 000641 CTTGATTCCT TAAGGTACTA CAGGAATCAG AGACAAAAGT GGAAAGAACA AATTAAGGTT GGAGAGAAAT TTTCAGTTTA 000720 000721 AAGTTTATAG ATATGAAGAA AATTCTTATT TTACCCATTA AGAACAAATA CAGAAGTGAA ATTTTCTTAC TGGTAGTCAG 000800 000801 TGGTCAGATA TAGCTACATT TTCCCCTTAA GTCATACCAC CCAACTCTAG CTTCCAAAAA ATGTTGAAAA CTATCATTCA 000880 000881 GCATATTCTG AGACATTCTA GTGTCTTCAT AGTGGTATAC CTGTTGTAAC ACTGGCAACT TTTATAGGTA TGGAGGACAA 000960 000961 AGCATTCCAA CAAATTTTCA TGGTGGAGAG AAAAAGGCCT ACTTTCTTAT TTTGTTACAG AAGCCAGAAA CTCTTAAAAA 001040 001041 AAACTAACAT TGCTGCCAAA TACAATTTCC ACACAACTCC ATCTGTGGTA TTGACTTAGC TGGTAAACTT TTTATTATTT 001120 001121 AAAGAAAAAA AATTACATAT ATAAAATGAT AAATATTTTT AATGATACTT TAATATGGTT TTTCCTCAGT TATGTTTAAA 001200 001201 GTCCTACCAT AGTGTTAAGC AGTAGCCTTG ACTTTGAACC TAAAATAGAA ATACAAGTAA GAAAAATTAT GAGTTGAAAA 001280 001281 TTAGCTTCTT GGACTTTGTG TTTCTCATTC CTTACCATTT TTCACTAGTA CATCTATCCA AATCACAACA CGTTTCTTTT 001360 001361 TAATGAGATT TAATAAAAAA TGTTTATTGT GGCACAAATT CAATGAGCAA GATACTCTTC AAAAGGAAAT ATAATTTTAT 001440 001441 TTAGTTCAGA TTCTAAAACT TGTACTTTGT TTAACTTTAT GTATCTTTTC ATTGGAAATA CCTTTTTGTT ATTCTTTGTT 001520 001521 GACATTGAAA TCACTTTATT AAATAAAAGC CTACTGCAGT AGCACATGCC TGTAGTTCGA GCTACTCGGG AGTCTGAGGC 001600 001601 AGGAAGACTG CTTGAGTGCA GGAGTTCAAG ACCAGCCAGG GCAATGTAGC AAGACTTTGT CTCTAAAATA ACAATAATAA 001680 001681 ACTCAGCAAT TAAGATTAGT TGACATTGGA CCACTTACAG AATATTTTTT TCAAATTAGC CCTACTACTT GTAGGTTCCT 001760 001761 CCCAGTCTTA AGACTAAATA CCTTTTTAAT TTGGGGTAAA TGTCAGAATT GGAAGAGACT TTAAAGGGCA TGAAGAATTC 001840 001841 TACTCCAAAG GTTATCCAGT CCACGTACCC ATCCAGCCTA TCAAGTGTAA ATCCTTTCTG TACTTTAAAT TCTTATGAGA 001920 001921 CACAAACTGC CTCCTAAGGT AGCATATTCT GGTTTTGGAG AGCTCTACCT ACTAGCTGGT TATTTCTTAC ATTAAATTAA 002000 002001 TACCTTTAAA AAGTATTATG AAAATAACAC ACTCAGTAA |
Predicted Small Protein
Name | NONHSAT115498_smProtein_1799:1936 |
Length | 46 |
Molecular weight | 4930.4534 |
Aromaticity | 0.0666666666667 |
Instability index | 58.2866666667 |
Isoelectric point | 4.94464111328 |
Runs | 9 |
Runs residual | 0.0377525252525 |
Runs probability | 0.0482541364894 |
Amino acid sequence | MSELEETLKGMKNSTPKVIQSTYPSSLSSVNPFCTLNSYETQTAS |
Secondary structure | LLHHHHHHHHHLLLLLLEEEEELLLLLLLLLLEEELLLLEEEELL |
PRMN | - |
PiMo | - |