NONHSAT116076
Revision as of 02:06, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT116076 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
900 nt |
Genomic location |
chr6+:167465448..167466347 |
Exon number |
1 |
Exons |
167465448..167466347 |
Genome context |
|
Sequence |
000001 tttaattttt gttttctata tgtctcgtgt ttttgtggct ttgcttcttc ttctttgctt tcttttgcat taagtatttt 000080
000081 ctagtttaac aacttaattt cttaaattat ttttaactat atttttacgt atttccttaa tgaatgcttg atggctcaca 000160 000161 atctccttct cagtttatca gaatctactt aagtttatac taacttatgt ccagtgagat agaaacacat ttcttcttta 000240 000241 tagctctagg tcctcttcac ttgtttttgt gctattattg ttatacttac tacctctgta tatgttacaa gcccaagaat 000320 000321 actattctac ttatttatat aattttatgt tttttaaaga aCCTGAGACT GGAAGTGAGG GAAATAGGGC GTGCAGGAAG 000400 000401 GAAGGAAGAG GAAGGAAAAG TGTGTGAAAG GGGGCTCCAC CTCCTTTAGT GGATACCCTG AGCTTATTTC CAGGGGCCTT 000480 000481 TGTAAATTCC CAGTGACAAC TCTTTGGAAG ATGAAATCCC CCTCTTCCCT GCATCTTATT AGAACAGTGT ATCCTGGAGG 000560 000561 ACATCCCTTG CCTTTCACCA AGTGACCCTA TACTGGCGGC AGAACTTCTC GATTTTGCGG ATTTCAAAAT GGCTCCACGT 000640 000641 ACTCATAGTT TTCATGACAG ACTTCATTGC GATAGTCAAA TACTGTTCCA CTTACTGCAG TTGCCTACAG TCTGGGTTTT 000720 000721 GTTCAGTTGA AATTAAATAA ATTTTATGCA CAAACCTTTC ATGGCTGTCT GCGATCTTTT AAAAAATGTG AACATGTACA 000800 000801 GGATGATAAG TTCTAAGGAT GTATGTTCTG CAAAGCCTCA GAGCAGGAAG TAGAAGTACA CTTGTACATT AGAAGATGAA 000880 000881 TATGCTTTTG GAGTTTGGAC |
Predicted Small Protein
Name | NONHSAT116076_smProtein_206:448 |
Length | 81 |
Molecular weight | 9527.3134 |
Aromaticity | 0.15 |
Instability index | 40.34125 |
Isoelectric point | 8.23065185547 |
Runs | 13 |
Runs residual | 0.0236842105263 |
Runs probability | 0.0352139469787 |
Amino acid sequence | MSSEIETHFFFIALGPLHLFLCYYCYTYYLCICYKPKNTILLIYIILCFLKNLRLEVREI GRAGRKEEEGKVCERGLHLL |
Secondary structure | LLLHHHHHHHHHHLLHHHHHHHHHHEEEEEEEEELLLLEEHHHHHHHHHHHHHHHHHHHH HHLLLHHHHLLHHHHLLLLL |
PRMN | LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHLLLLLL LLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTTTToooooo oooooooooooooooooooo |