NONHSAT133369
Revision as of 02:30, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT133369 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
4389 nt |
Genomic location |
chr9-:98205694..98212218 |
Exon number |
3 |
Exons |
98205694..98208673,98209193..98209733,98211351..98212218 |
Genome context |
|
Sequence |
000001 TTCTTTGCTG TGCTGGCGAT CCTCACCATC CTCGGCGTTC TCAATGGGCT GGTTTTGCTT CCCGTGCTTT TGTCTTTCTT 000080
000081 TGGACCATAT CCTGAGGTCA GTAGTGACAC GGGGATGTCC CACGTGTAGG CCGGCTGAAT GCTGTGTTTC CTGTGCCGCT 000160 000161 CTTCACTTCG ATACTTAGGT GCCTCCCCAC TTGCTGGTGG TTCTTCAGTA AACATCTCAG AGTCATGTCT GTTTTCCTCT 000240 000241 TCGGTGTACT GGCTTTGAGG GCTAGAGGGC GGGTTCGGTT TGGTTCCTCT AAATCAACTG ATTGGCAGCC TGGGTCTTAC 000320 000321 AGATCTTTAT ACAGTAAATG AAGACTTTCC CCTTGAGATG CATAATTGGA CTTCACAAGA GTAAAAAGTA CACATCCTGC 000400 000401 CTTTCCAGTG TGGAGCAGAG GACAGTTCTT CTGCTCCAGC TGCGGGACCT GAAGGTCCTC CAGGTGGTAG AGAAGGGGAG 000480 000481 GTTAATACGG CACAGTGCGC AGGGCCCCAG GGCAGGGAAC AGAGGCCCCT GAAAAATACC GTGCTTTGAG CTTTGAGTGT 000560 000561 GGCCAGCAGG TAAATGGACA AGAACACTTT TAACATGGAA TCCCCTTAAA TAGGTGTCTC CAGCCAACGG CTTGAACCGC 000640 000641 CTGCCCACAC CCTCCCCTGA GCCACCCCCC AGCGTGGTCC GCTTCGCCAT GCCGCCCGGC CACACGCACA GCGGGTCTGA 000720 000721 TTCCTCCGAC TCGGAGTATA GTTCCCAGAC GACAGTGTCA GGCCTCAGCG AGGAGCTTCG GCACTACGAG GCCCAGCAGG 000800 000801 GCGCGGGAGG CCCTGCCCAC CAAGTGATCG TGGAAGCCAC AGAAAACCCC GTCTTCGCCC ACTCCACTGT GGTCCATCCC 000880 000881 GAATCCAGGC ATCACCCACC CTCGAACCCG AGACAGCAGC CCCACCTGGA CTCAGGGTCC CTGCCTCCCG GACGGCAAGG 000960 000961 CCAGCAGCCC CGCAGGGACC CCCCCAGAGA AGGCTTGTGG CCACCCCCCT ACAGACCGCG CAGAGACGCT TTTGAAATTT 001040 001041 CTACTGAAGG GCATTCTGGC CCTAGCAATA GGGCCCGCTG GGGCCCTCGC GGGGCCCGTT CTCACAACCC TCGGAACCCA 001120 001121 GCGTCCACTG CCATGGGCAG CTCCGTGCCC GGCTACTGCC AGCCCATCAC CACTGTGACG GCTTCTGCCT CCGTGACTGT 001200 001201 CGCCGTGCAC CCGCCGCCTG TCCCTGGGCC TGGGCGGAAC CCCCGAGGGG GACTCTGCCC AGGCTACCCT GAGACTGACC 001280 001281 ACGGCCTGTT TGAGGACCCC CACGTGCCTT TCCACGTCCG GTGTGAGAGG AGGGATTCGA AGGTGGAAGT CATTGAGCTG 001360 001361 CAGGACGTGG AATGCGAGGA GAGGCCCCGG GGAAGCAGCT CCAACTGAGG GTGATTAAAA TCTGAAGCAA AGAGGCCAAA 001440 001441 GATTGGAAAC CCCCCACCCC CACCTCTTTC CAGAACTGCT TGAAGAGAAC TGGTTGGAGT TATGGAAAAG ATGCCCTGTG 001520 001521 CCAGGACAGC AGTTCATTGT TACTGTAACC GATTGTATTA TTTTGTTAAA TATTTCTATA AATATTTAAG AGATGTACAC 001600 001601 ATGTGTAATA TAGGAAGGAA GGATGTAAAG TGGTATGATC TGGGGCTTCT CCACTCCTGC CCCAGAGTGT GGAGGCCACA 001680 001681 GTGGGGCCTC TCCGTATTTG TGCATTGGGC TCCGTGCCAC AACCAAGCTT CATTAGTCTT AAATTTCAGC ATATGTTGCT 001760 001761 GCTGCTTAAA TATTGTATAA TTTACTTGTA TAATTCTATG CAAATATTGC TTATGTAATA GGATTATTTT GTAAAGGTTT 001840 001841 CTGTTTAAAA TATTTTAAAT TTGCATATCA CAACCCTGTG GTAGTATGAA ATGTTACTGT TAACTTTCAA ACACGCTATG 001920 001921 CGTGATAATT TTTTTGTTTA ATGAGCAGAT ATGAAGAAAG CACGTTAATC CTGGTGGCTT CTCTAGGTGT CGTTGTGTGC 002000 002001 GGTCCTCTTG TTTGGCTGTG CGTGTGAACA CGTGTGTGAG TTCACCATGT ACTGTACTGT GATTTTTTTT TTGTCTTGTT 002080 002081 TTGTTTCTCT ACACTGTCTG TAACCTGTAG TAGGCTCTGA CCTAGTCAGG CTGGAAGCGT CAGGATATCT TTTCTTCGTG 002160 002161 CTGGTGAGGG CTGGCCCTAA ACATCCACCT AATCCTTTCA AATCAGCCCG GCAAAAGCTA GACTCTCCTC GTGTCTACGG 002240 002241 CATCTCTTAT GATCATTGGC TGCCATCCAG GACCCCAATT TGTGCTTCAG GGGGATAATC TCCTTCTCTC GGATCATTGT 002320 002321 GATGGATGCT GGAACCTCAG GGTATGGAGC TCACATCAGT TCATCATGGT GGGTGTTAGA GAATTCGGTG ACATGCCTAG 002400 002401 TGCTGAGCCT TGGCTGGGCC ATGAGAGTCT GTATACTCTA AAAAGCATGC AGCATGGTGC CCCTCTTCTG ACCAACACAC 002480 002481 ACACGACCCC TCCCCCAACA CCCCCAAATT CAAGAGTGGA TGTGGCCCTG TCACAGGTAG AAAAACCTAT TTAGTTAATT 002560 002561 CTTTCTTGGC CCACAGTCTC CCAGAAATGA TGTTTTGAGT CCCTATAGTT TAAACTCCCT CTCTTAAATG GAGCAGCTGG 002640 002641 TTGAGGCTTT CTAGATCTGT TTGCATCTTC TTTAAAACTA AGTGGTGAGC ATGCATTGTG GTGTAGAGGC AGGCATTATG 002720 002721 TAGGATAAGA GCTCCGGGGG GATTCTTCAT GCACCAGTGT TTAGGGTACG TGCTTCCTAA GTAAATCCAA ACATTGTCTC 002800 002801 CATCCTCCCC GTCATTAGTG CTCTTTCAAT GTGATGTGGG AAAGCAGGAG GATGGACACA CCCCACTGAA AGATGTAGGC 002880 002881 AGGGGCAGGT CTCTCAACCA GGCATATTTT TAAAAGTTGC TTCTGTACTG GTTCTCTTCT TTTGCTCTGA GGTGTGGGCT 002960 002961 CCCTCATCTC GTAACCAGAG ACCAGCACAT GTCAGGGAAG CACCCAGTGT CGGCTCCCCA TCCAAATCCA CACCAGCACC 003040 003041 TTGTTACAGA CAAGAAGTCA GAGGAAAGGG CGGGGTCCCT GCAGGGCTGA AGCCTAAGCT ACTGTGAGGC GCTCACGAGT 003120 003121 GGCAGCTCCT GTTACTCCCT TTTAAATTAC CTGGGAAATC TTAACAGAAA GGTAATGGGC CCCCAGAAAT ACCCACAGCA 003200 003201 TAGTGACCTC AGACCCTGAT ACTCACCACA AAACTTTTAA GATGCTGATT GGGAGCCGCT TGTGGCTGCT GGgtgtgtgt 003280 003281 gtgtgtgtgt gcgtgcgtgc gtgtgtgtgt gtCTCTGCTG GGGACCCTGG CCACCCCCCT GCTGCTGTCT TGGTGCCTGT 003360 003361 CACCCACATG GTCTGCCATC CTAACACCCA GCTCTGCTCA GAAAACGTCC TGCGTGGAGG AGGGATGATG CAGAATTCTG 003440 003441 AAGTCGACTT CCCTCTGGCT CCTGGCGTGC CCTCGCTCCC TTCCTGAGCC CAGCTCGTGT TGCGCCGGAG GCTGCGCGGC 003520 003521 CCCTGATTTC TGCATGGTGT AGAACTTTCT CCAATAGTCA CATTGGCAAA GGGAGAACTG GGGTGGGCGG GGGGTGGGGC 003600 003601 TGGCAGGGAA TTAGAATTTC TCTCTCTCTT TTAATAGTTT TATTTTGTCT GTCCTGTTTG TTCATTTGGA TGttttaatt 003680 003681 tttaaaaaaa aaaaaaCTTT GCTGATATTT ATAATTTTGT ATCATAAGAA TGTTTTCCTC TACAGTATTT GTCATGCCAG 003760 003761 TTTATAACAA AAAAAAATGC AGGGATTTTA TTTCTATTGG AAACATTACA GCTATGTTTT ACTTTTGGAC AGAATTTTTA 003840 003841 TTTGTATAGA GTGCTTACTA ATGTTAAATA GTTCAGAGTA TATAACATTT ACATTAAGGA CTCATGGTAG GTTTTAGGGT 003920 003921 AAGGAGTTTA AAGGAAATAA ATATTCAAAC TGGGTCTCAT TGCCAATTTT GGTGGAAATG AGTTTGTGTC ATTTCAATTA 004000 004001 CAAAGATAAA AGTATGCCAT ATAATTTATT TATATGAAGA TTTATTTTTG TAGTGTACAT AGTAGTCATC AAGTCTTTTG 004080 004081 ACAGAAGTAT ATTTTTAAAG AATTTATATG TGATGAATCC ATAATGTCTG GAACTTTGCT GAGACATGAG TGGGCACAGT 004160 004161 TTTCATTGTA AATTACAGCA AGGAAAGAAA ATGTTTAACA GTGTTAAGAG AGTCAGAGCA GAGTGGATAT TCATGCGATT 004240 004241 ATGAAGTGTT TATTAGTTAC CATTGGCGAC CTAGCATGCT TCTCATTTCA AACCTTGGAA GGTGAAAATG TACAAACTCT 004320 004321 CTAAATAATT AATGTTCAAA CACTGATAGA AATTCTAACA TGAATAAAAA ATAATATAAC TTGTTGGTT |
Predicted Small Protein
Name | NONHSAT133369_smProtein_3776:3916 |
Length | 47 |
Molecular weight | 5733.704 |
Aromaticity | 0.239130434783 |
Instability index | 64.2569565217 |
Isoelectric point | 7.81634521484 |
Runs | 6 |
Runs residual | 0.0309265010352 |
Runs probability | 0.0532591414944 |
Amino acid sequence | MQGFYFYWKHYSYVLLLDRIFICIECLLMLNSSEYITFTLRTHGRF |
Secondary structure | LLLEEEEEHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHLLLL |
PRMN | LLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLL |
PiMo | oooooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiii |