NONHSAT133430
Revision as of 02:30, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT133430 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2406 nt |
Genomic location |
chr9+:99262637..99266837 |
Exon number |
2 |
Exons |
99262637..99264842,99266638..99266837 |
Genome context |
|
Sequence |
000001 AAAAAATCAA GACAATGATT GATCAATACT GATCAGTTAC ATTTTAAAAC TTTTAATAAT CTGTACATGA GTGCAGGTTA 000080
000081 GATAAAAGTC TGCAAATTAT TAATAGAAAA CTGCAGTACT ATCATCGGAT GAACATGTCT GCTGACAATT CTACCAGGTA 000160 000161 ATTAAGGAGG TAATTTCCTA CACAGTATAG GTGAATTGTC CAGTCTTTAA ACACATCTGG AGTCATCTCC ACTGAGTGAC 000240 000241 ATGGAGAATA ACCTGATGTG GGTAAATGGA AGAGCAGCAG ATAGCCTCTC CAGGGCAGTT TCAGCGGGAG AGAACATTTA 000320 000321 AAGGAACAAT AAAATAGGTT TTAAAAGTTG CTTTTGATGA GCACTGCTTT CCAAAATGCA ATAATGATTT TTTTTAATGT 000400 000401 AGAAAGAGAA GCTGTGTTAA GAACAGACAT CCAATGAGTG CACTGCTTCT GTGGCTCCAA AGGTGACTGG GAAAAGAGAA 000480 000481 GGCCCCAGGA GAGCCCTCAG GCCACACACA AGCCCAGGCC ATCCCGCCCA GCCCAGCGAG CACACTGGCC TCATAACAAT 000560 000561 GCTTGGGAAC TCCTCTAAAA CTTGCCTAGG CCCAAGAAAA CAGAGAGGTA GCAATCACCC CTGTGAGAGG GCTAGAGAGG 000640 000641 AGGGGAGGAA GTAGGTAGGG GACAGGCTAG GGGCATCAAG CTCAGAACAG GGGAATTCTG GAGGCCGCAG AGCTGCGTGC 000720 000721 TGCCGGGAAG CACTGGCCAC GCCAGGCCAT TCTGCTCTCA CGAGGCGCTG CTCCTCACCA AATTCTACAA AAAGCTAAGT 000800 000801 CCGTCTATAC TTCTAGGAAC CCAGTTTTGC AGACGCTCTT CCTCCGGACT GTCCCTGACT TTTGATAATT TTGAGTCCCC 000880 000881 AGAAAGCTTC AAGAGCACCT AAAAATATTC ACTTCCAATT TTAATTCCAT CGCAAACCGT CCCAGTGTAC TTTCAGGGCT 000960 000961 ATTTAAGGCT CTTAGGTTAA GGGGATCTCT CCATCTGACA CACAGTTTCA TGTTCCATAG CAACAAGGTC TTCTATAACA 001040 001041 ACGACTCTAA GTCAGAATTC CAGAAGATTC TGGTTGTTTG TGGTTTCAGT TGGGGGTGAG GGGAAGAGTC CACTCTCATT 001120 001121 CATAGCAGGA AGAACTTTCC ATCCCTCAGA CCCAGAGACT TCCTGGATGC TAGAGACAGT CCTCATAAGT GTAACACTGC 001200 001201 CCTTGCTATG CACACCATCC CAAGTCATTT GGTTATTACA AGGAATGCCT CTTCACCAAA TCACAAGTTT TCTATGACTA 001280 001281 ATTTCAGTGA ACCAGTTAAA TAGAAAGATT TTTAGAAAGA GCCACAGTGA TAGCAATTCT AGGTGGAAAC TTGAGCAGGC 001360 001361 AACATGAAGA GGCAGTTTAT AAAATGAAAA AGGGCTGTGG TTCCAGTGAC ACCCTTTCTT TTCTTGGACG AAACACCAGG 001440 001441 AGGCTCATTC ACCGTGAGGG AGACAGTACT CACAAGAGCT GTGGCGCCTA CGTTTACTTG TTCTGATGGG ATGAAAAGCC 001520 001521 AAACTAAGAA GGGATCAGAT AGAAGCACGA TTTTCACAAC TACCTGGATT ATTATTAATG GAGGGGATGG CCTTAAAAGG 001600 001601 GGTAAGGGGA AGAAGAGGTG CCCTGAGAAT TCAATGCTTT ATGCATGGCA CAGTTTGAAT ATTTATATTG TCTCAGCTCA 001680 001681 AAATAGCAAA AGGAATGTTC CTCCTCCCAC CCAAATCTTA TTGAAGAGTA GTCTGCCCAC AGCCAAGTGG GTCTTTGTGC 001760 001761 CTATTCATTT CCAGGGACAG AAAACCACTG TTTTTCTGTG ATCCAGTCCC CAGTGTTTAA AAGCTGGCCT GACCCCACCC 001840 001841 GACAGTGCCT GGCGGGGAAA GAGTTGCTTG TTTGGCTGAG AACACGGCAT CTTCCGTCTC TCATGATGCC GGTCAATTTT 001920 001921 ATACTTTCTT CCAAGAAAGT ACACCAAAAT GGAGGCACTG CCTTTCAATT ACTTTTTGCA TTAAAGACTT TTAACTTGTT 002000 002001 TATTCCAACC GCTTTTATTT CTTCCAGTTT TGTGAAAAAG GCAGCTTCTT AAAATGGAGT TGCCTACTAA TCTGGCGCAC 002080 002081 GCCTTGTGGC TTAGGAGGGC ATTTGTTTCC CACTGCCTGT CGACATCTCA GCCCTCCATG CTCCCGGCAC AGGCAAAAAT 002160 002161 GGCTTAACAA TCATTAAACC ACCCACTTCT TATGGAAGGA ACTGAGTTCA CGACGCTACA CTTTCAGGTC AGTAACAACT 002240 002241 TTCAGAAAGC AAACAAAACC AAAATAAGAG TCAGAAAAAC CACTTCCAAT CTGGAGGGCT CCTCGCCCGA TGCTGCTGCT 002320 002321 GCTGCGCTCT TCAAGGAGAA GCGTTTGAAT CGATCATTTC GTTTTCAGAG ATCCCAACAG AGCACTGAGT CAAAGATCCA 002400 002401 GACCAG |
Predicted Small Protein
Name | NONHSAT133430_smProtein_1166:1276 |
Length | 37 |
Molecular weight | 4036.9034 |
Aromaticity | 0.0555555555556 |
Instability index | 55.0638888889 |
Isoelectric point | 5.22235107422 |
Runs | 7 |
Runs residual | 0.013986013986 |
Runs probability | 0.0443132207839 |
Amino acid sequence | MLETVLISVTLPLLCTPSQVIWLLQGMPLHQITSFL |
Secondary structure | LEEEEEEEELLLLLLLLHHHHHHHHLLLHHHHHLLL |
PRMN | - |
PiMo | - |