NONHSAT133884
Revision as of 02:32, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT133884 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
892 nt |
Genomic location |
chr9+:110329106..110338504 |
Exon number |
3 |
Exons |
110329106..110329478,110331339..110331539,110338187..110338504 |
Genome context |
|
Sequence |
000001 agttttgcta gcagaaaata cgactctctt ctatgctgtg gtaaaatagt acaaccacaa ggccaggatc catagaatgt 000080
000081 gaccagctgt ttcagtggtt ttctgttact atttgtgaag tcttcattct tgtcatctct agcagaagag tggtgccagt 000160 000161 tgccagaggt ttgaggaaaa agaagtcatg ggagaattta catttcagaa aattccattc attgacttaa ttatttctgg 000240 000241 gaattcagaa aagaccacca tgatccttta gccgcgaaaa cacttgggcc agttttggaa atgctagaat cctgcaggag 000320 000321 aagcttttga gaaATTCAGT ACTGTGCAGT GTTGTAACCC GAATACTTTG CTGGGAGAAA GGGTTACTGA GAGATCATAT 000400 000401 TCACAAATCA ACGTGCAATA GTGAAAAAAG ATGGCAACAC TGAAGAACCt tactgaataa cccagtatgg accacgtatt 000480 000481 gtaataggca cttaatttct ctcaatcctt tcgatatctc cttgaaatag gtactattag ccctcaattt acagataaga 000560 000561 aaactgaggc tgagGCGAAG GTcatatgat agctgcttaa taaaatttgc tgatcgaatg aaGGAGCTAA TGAATTCAAT 000640 000641 AAAATCAGGG AAGGCTTCTT GGAGGAGGAG CACCTTGCTC CAGTGGGCTG AGAAGACATT CCATGAGACC AGAGCAAGGA 000720 000721 GAGGAGTGGC CTGGCAGCTG AAGCCAGAGA CAGACTTGAA CCTGGAGGTA TGAAAGCCTG TGTGGGGGAT CAGGTAGTCT 000800 000801 GTACAATCTT GGGGCTTGGT AGGTTTCAAG TGGAGGCCAC ACTGCGGGGA GATTGTAGGG GTTGACAGGG AATTCTGATT 000880 000881 AAGCTATTTC AG |
Predicted Small Protein
Name | NONHSAT133884_smProtein_617:772 |
Length | 52 |
Molecular weight | 6028.8805 |
Aromaticity | 0.078431372549 |
Instability index | 42.0176470588 |
Isoelectric point | 10.151184082 |
Runs | 8 |
Runs residual | 0.00262085032033 |
Runs probability | 0.0301956368133 |
Amino acid sequence | MKELMNSIKSGKASWRRSTLLQWAEKTFHETRARRGVAWQLKPETDLNLEV |
Secondary structure | LHHHHHHHHLLLLLHHHHHHHHHHHHHHHHHHHHHLHHHEELLLLLLLLLL |
PRMN | - |
PiMo | - |