NONHSAT135152
Revision as of 02:36, 17 October 2014 by 124.16.129.48 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT135152 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2228 nt |
Genomic location |
chr9+:133454352..133457473 |
Exon number |
2 |
Exons |
133454352..133455151,133456046..133457473 |
Genome context |
|
Sequence |
000001 AGAGTTTGTT AAGGACCGTG TAAGAGGACA CCACGCTGGC TTTTCAGTGG GCGCGTCTCT CCTGGGGGCA TCACCAGACA 000080
000081 ACCCCAGGCG GAAGTGGCGG TGGCCCATCC TCATGCAAAC TGCAGTGTAA GAACTGGGGC CCGGGACTCC TCGCAAATGT 000160 000161 GGGACACTGA CATTCTGTGA TGCTGTCCCA ATGCCCTTTC AAAGCGCTCA GCCCCCAAAT TCCCAACCAA CAGCCATTTC 000240 000241 AGGGAGGGGC TACCCAGGAC CAGGCTTTTG ATGAACCACG ACTGTTCGGG GTGCCGTCTT GGGAGAGCCA CGTCAGTCCC 000320 000321 TCTGAGATTC CAAACGGCCG ACAGCGGACA CCTCGGGACC ACATCCAAGC CTCGGGGACC TGTCAAGACG CCATCGACGG 000400 000401 TCCTGGACCA AATCCCGCCC GGGAAGGGAA GGGTCGCGAC CGGACCCTGG AGACCCACGG CTGCCTGGCG ATCTGAGCCC 000480 000481 ACCCCGGCGC TGCCGTCCCG CCCCCACTTC CGATCGGTCG AAGGTCACGT GCCCTGACCC CGCCCCGCAG ACGCGACTCC 000560 000561 TCCAGCTGCG AGCGTCCCGG CTTTCCCTTC CGCCGGAAGT AGGGCGACTT TCCTTTTCCG GCTACGGGTC CCCAAGCGGA 000640 000641 GCGGGAGGCC GGACCGGGGA GCCGAgcggc ggcgtcggcg gcgtcggcgg cggcggcgac ggcggcgggg gcggTAATGG 000720 000721 CGGAGCTGGT GCAGGGGCAG AGCGCTCCTG TGGGGATGAA GGCCGAGGGC TTCGTGGATG CCCTGCACCG GGTCCGGCAG 000800 000801 AAAGCCACAG GAGTCATTGT ATTAGAAGAA GGTCTTCACT CGGGCGCTTG AAGATATGGT CTTTACATCT CTTTCCAGTA 000880 000881 TTCCAGGGGA GGGAACCCTA CCTGTTTCCC TGATAACTGA CTTTTCATGT TATATATTGA TGCTCCTATA GACATTATAT 000960 000961 TGGATCCCAG AACTTTCCAA ACCTGTGGTT CCACCTAAAA TTTTATCTGA TGAATTGTTA CTTTACTGCC TAGCTGCCAA 001040 001041 CCAGTACAGT AGTGAGTATC CATCTTACTT AGACTTCAGA TCCACCCATG GCTGTAATGG ATGAACATGC CACCCAGCTC 001120 001121 CCCTTCCACC ACTCTGCTTG CTGGCGTGTT ACAGTGCTCT CCTCTACAGT ACAGGGTCCT GAACCTTGTT TCTCACTGGC 001200 001201 TACTAATATG TAATGGCTTT CGCTCTGTGC TGATGTGTGA CAGTCACCTT GTTGGCCTTC TATGTCCGGG AAGAATTATA 001280 001281 GTCACTGCCC TAAAGGGCTC AGATCCTCAG TTTGCAGAAG GCCTGTAGTT GAACATAAAG TGAATTTTGA ACCATTGAGA 001360 001361 AGACATTCCG CTTCTCTTGA GCCAGTGGTT GAACTCATAT TCTTGGACAA CCTGCTCCAG AGGGAGACCC TCTGGTAAAT 001440 001441 GCTGACCTAA TGTGGATTGT TGAAGCAGTG GTGTTTACTA CTAGCAGTGA AAACTTCATT GGAATTGTTC TCAGCTCTGA 001520 001521 AATGCACCAT TGACTGGAGC AGTAATAAGC CCAATGGAGA CAGGGCTGTA AGTGTGTTCC TTCTGAATGT TAACAGCTGG 001600 001601 AGGTCCATAC TATCTCCAAG GATTTGATGG CCTTTAAAAA CTAAAGAAAA ACCAGGTTGG TGGGTAATTT TAGGTTTATT 001680 001681 GTATATAGAT TTGCATTGGG CAAGAACGGA ATGTTAGAAA TCTGTAATAC TGTATGCTGA TGGTAAACTT ACTGTAAGGA 001760 001761 TCTCATTTGG GTATCTGGAA GGTGATAGTT CTGTTTCTTT GTTATATACA CAGCATGTTA CAGAGATGTG ATTTTTCTCC 001840 001841 CCATTAAACA GAACTAAAAG ACAGTATATT TATTTAAACG CAAAGCTTTT TCCCCTTTTA TGTCTCCTCA TAAACTCCAG 001920 001921 AGACAGTCTG GAAGGCCCTC TTAAATTTGT CAAAGAGcag taaagtgtct cacgctcagt ttttctagca gatcgtaata 002000 002001 ctctcagttg accctgctgg gatttgaacc tgcagtttct attaagtttg gtgtgtgaag tccaacacct tatcaactag 002080 002081 gctttccctc tgacATCTTG AAGCCTCCGT GTATATCCTT TGGACTCTGC AGCAAAGTGC ATCAGTTGTT AGTTTACTCT 002160 002161 GAGCATGGTA TTCTTAGATT GAAAAGAAGT CTCTGAAGAT GTCAAATAAA ATGTAAACAT TTTCTCCA |
Predicted Small Protein
Name | NONHSAT135152_smProtein_179:475 |
Length | 99 |
Molecular weight | 10632.641 |
Aromaticity | 0.0510204081633 |
Instability index | 49.35 |
Isoelectric point | 5.82769775391 |
Runs | 11 |
Runs residual | 0.0267976349418 |
Runs probability | 0.01677345795 |
Amino acid sequence | MLSQCPFKALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRD HIQASGTCQDAIDGPGPNPAREGKGRDRTLETHGCLAI |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEELLLLLEELLLLLLLLLLLLLLLH HHHLLLLLLLLLLLLLLLLLLLLLLLLLEEEELLEELL |
PRMN | - |
PiMo | - |