NONHSAT135480
Revision as of 02:37, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT135480 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2014 nt |
Genomic location |
chr9-:138898385..138900389 |
Exon number |
1 |
Exons |
138898385..138900389 |
Genome context |
|
Sequence |
000001 CTGTAGAGAG AGACGAGCCA CTCAGTATTT ATGAGATGTC TGCACCTTTA TCCCTAAGCC TGACTATTAG CAATACGCAT 000080
000081 ATCCTATATA GAATCTATTA CAGAGCTACG TTATCTCCAC ACCTTTTGAG GAGGACAGAA GGGACTGGAC CGTGTTGGAG 000160 000161 CTGCCGCCTG GCAGGTGGTG GGCCTGGGAT CTAGCCGCCT CTCCTGCCCT GCCTTCCTCT TCCCCAAGGG GATGGGCCCA 000240 000241 GGAGGCAGCT GGGTTGCATG GAGAGGTCCA GGAGGGACCG GAGGTGTGAC AGATACTGTG AGCCCGGCGG GCCGCGCCTG 000320 000321 GCTGGGTGCC TCGGTACTTG AATTCTGTCT TGTTTTCCGC ATTGTGTCTG TCCACCCGAG TTCTCTGTCG TCACTTAACT 000400 000401 TTGCATTGGA TTTGGTTGTT GTACTTTGCC CCTGAATGTG GACAAAGCTG TGGGCAAGAG GTCAGCAGGA CCCGCCTGGG 000480 000481 GGTGCCGGCG TTGGTGACTG CGGGTCGGGG CTCCTAGAAC ATAGGAGCCG GCTGCCTGGC CTCCTTTCTC CTCCAGGAAG 000560 000561 AGTCATTCTT TGGCATTTGT GTTTAGAGCC AGGAGGAAGG CGGAAGGTAG GGAGGGAGGG CTGGTCCCCC TCTGAGGGGG 000640 000641 CTCTAGTGCC TGACCCTGAC CTGTCCTCAT TCGACAGCTG AAACTGTTAA GCGCTGGCCC AGTCCCCCCA CCCCACCCAG 000720 000721 CCGTGTACTG CCTGGGCTCC CCTCAAAGGG AAATTTTTAC GGAAACATCT TGGCAGCAAG TGGAAAAAGA TCTATGGCCC 000800 000801 ATGAACCAAC TGAAAACTCC AAGAACCCTC TGTCTGCCTC TGCCAGCAGC GAGTCCTAAG CGCAGAATCC AGAGCTCGTA 000880 000881 GCTGTCCTCA GCTGTAACTA CTGTTTCAGA ATGTTGCTGC TGCATACATT TGTCATGTCA GCCAGCCAGC TCCGTGGGTG 000960 000961 AGAGTGTGCG TGTGCGCGTG TCTGTGTGTA TGTGCGTCTG TGTGTGCGTG TCTGTGTGTG TGCACGTCTG TGCGTCTGTG 001040 001041 TGCGCGTCTG TGCATGTGTG TGTCTGTGCG TGTGTGCGTC TGTGTGTGCG TCTGTGCGCG TGTGTGTGCG CGTCTGTGTG 001120 001121 TATGTGTGCA CGCGCGTCTG TGTGTGCACG TGCGTGTCTC TGCACGCGTG TCTGTGTATG TGTGCACGCG TGTGTCTGTG 001200 001201 TGTGTGCACG CGCGTGCACG TCACCACCGG AGCATTTAGG GTTTGGTACA AGATGGTTCT GAAATGGCAA AGGTTTTTCG 001280 001281 TGTTTGTTTG TTTTGTTTCT TTGAAAAAAG AAAAGGAAAG GAAAATCATG CAGAATCGCA AGCATTCAGA CTGGACGACC 001360 001361 GGCTCGTATT CCGATCAGTC GCTTCCATTG TTAGCATCGT ACACGATCGT GATTTTTATG TCAAAAGAAG CCAAAACTTG 001440 001441 CAATACTATT TTTAGCAGAC AAAAAAAAGA ACTAAGTATA AAATGTATAA ATATTTTTGA CTTGAACATT TGGATGGCAC 001520 001521 TGGGTGCAAG TAGAGCATCC ATCCTTCGGA TGGAATGTTT GGAAAAAAGA GACTTTTAAA AAGGAGACGG TTGTTTTAAA 001600 001601 GAGTCTGTTT AGGGGTTAAA GTACTGTAAC TCACGACTGT TAAAAAATAA ATTTTCCTGT GCTGTAAAGG AAGGTTTCAC 001680 001681 AGTACCACTG AGTTAGATTT CAGCCACAGA TGCTTAGCTT TTTTTTTTGT CTTTTTTTTA AGGAGGAAGC CTTTGTTTTG 001760 001761 TTTTCCTGAG CCCTCACTCT GTTTTTGTGC TGTTACTCGG TAGAGTCAAG ACTGTTACTT TTTAGCCATG GCTGACATTG 001840 001841 TATCAATAAC TAAAACTGAA ACATTCAAAA GCGAACAGGG AAACCGAGGG CTCCAAGCGT GCTCAGAGCC GTTTCAGACA 001920 001921 GTGGAAATCC ATGACAAACA AAAGGATGTG ATCATTAATT GTAAAGCGCT TTGTAAAATT CACATTTACA AAATAATAAA 002000 002001 GTCAGTTCAA ACCT |
Predicted Small Protein
Name | NONHSAT135480_smProtein_989:1261 |
Length | 91 |
Molecular weight | 9429.6592 |
Aromaticity | 0.0333333333333 |
Instability index | 50.79 |
Isoelectric point | 8.42559814453 |
Runs | 13 |
Runs residual | 0.00458553791887 |
Runs probability | 0.0082820376938 |
Amino acid sequence | MCVCVCVSVCVHVCASVCASVHVCVCACVRLCVRLCACVCASVCMCARASVCARACLCTR VCVCVHACVCVCARACTSPPEHLGFGTRWF |
Secondary structure | LEEEEEEEEEEEEEEEEELLEEEEEEEEEEEEEEEEEEEELLEELLLLLLHHHLLEELLL EEEEEEEEEEEEEEEELLLLLLLLLLLLLL |
PRMN | LLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLHHHHHHHHHHHHHHHHHHHH HHHHHLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiiiiiiiTTTTTTTTTTTTTTTTTTTT TTTTTooooooooooooooooooooooooo |