NONHSAT136388
Revision as of 02:40, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT136388 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2328 nt |
Genomic location |
chrX+:16860313..16862640 |
Exon number |
1 |
Exons |
16860313..16862640 |
Genome context |
|
Sequence |
000001 AAGGCGATTA GTTTTGTCTA ATAACCCATT TAAATGCCAA GTAAAAATAA AACTCCTAGT GTTGGGTCAG AAGCATATTT 000080
000081 GATTGAAATT AGCTTTTTGA AAACATTTAT ATCTCGGGAC AAATTGAGAT GGCCACATGC CTAGAATCCT AAGTTTCGGC 000160 000161 AGAATATGTA TATAAAGATG TCACTTGTGG ACAAAATAGT ACATAGAGGC AAATCACTAG ACAAATAAGC TTAGTGTTTA 000240 000241 CGTGACTGAA CAGTCATCCT GCTTTGGTTT CAGGTGTGGG ATTTGGACCA TGAGGGGCTC CCGTAGAGGA TGGCGGTTTG 000320 000321 TGTTTGATTC TGATTTGGGA TTTCAGTACA TATTCTCCAC TTCCCATAGA AGGCCACTTA TTCTTTGAAA ACTGGTGTTC 000400 000401 ATGTTTGCCG TTCAATGAAG TCCCTTGTCA AAGACAAGGA CGGTCAATTC ACGTGTCACT TTCACTAGGC AGAAGTTTCT 000480 000481 CCAATACCTT CTGGCTACTT GAAAGTTACT ACAAAAATTC CACCAGCAAA GTACTCCAGG TTTTTCAAAA GGAAATTTTC 000560 000561 ATTATGGATC AGTACCAACC GAAATTGATT TTCATTTCCA AAACAAACAC TGGCACCAAC ATTTTTACTT TGGGAAGACT 000640 000641 TGGCAGAGTG TTAGTCATGA TCTGTTACTT ACGTGTTCAG TCTGTTTTCT CACCCCCTTC TTAGTTACCA TCTCTTTTTT 000720 000721 AAGAAGAAAA AAGAAAAGCC ACAGTATTAT CAAGGTCTCT ACACTTGGAC TGGGGGAAAA TTTGAAATTA AGCACATAAC 000800 000801 TTTTTAATTA GTTCTTTGTT TCAATGTTGA ATGTGGCGCA GTTATGCAGA TGATTAATCA GGCTGCACTG ATGGAAGTTT 000880 000881 TGACTTTGTC CCTGGTATAA TTTGCATTGA AATGCTTTAT GAAATAAAAG GTTCTACTAG AACTGATGTT AGCACATTCC 000960 000961 ACTGAGCAAA ACTATCAGAC TGACACTTGT TAAATTGCTT ACTGGACTGA ATAAACTCTG TTTTGTCCAG TTAAAAGGGT 001040 001041 TTTCTCTTTG TTACAAGTGT TATTTGTAAA GTCCTGTCAC ATTCATGGTC GAAACTGGGT TGAAAGAATT GAAAATTGTC 001120 001121 CAACAGATAG ATAGATAGGA AACCGCCTGG AGTGGAGGAG GGTTGTATCT AAGCCTCCAC TATCAGTCAT GTTAATTCAA 001200 001201 GGGGCCACAG TGGAGGAAAA TAAATCCACA AAGTAGATTA TCTAATTACC ATCAAAATGA GTCAGAAGCA AAAAACACCA 001280 001281 CCCTCCAACA GCCTCTTAGG AGTACACCCT GTTCTGCTAC TAAAATACTA GACTCATTTC CCTGGTGGTG GGGGGGAATG 001360 001361 CAGGTATAGA TCAGAAATAT AATCCACCTT AAAATTAGTA CTAATGATCA CATTATTTCA CAAGAACTCT GCTGGATGTA 001440 001441 CAGCTCTTAA CATTTTATTA AGCCATTTGT GTAGCCCACC ACGTTTCTTT GTGGTGCTTG TCCTGTGTGG AAGATTGTAA 001520 001521 ATCTTGGGCC TGTTGCATAC TTCCAAGGGC TTTAAAGCAA TGTGATTAAC AGTACTTGGC CTGCTGCTTT TGGCTTACTT 001600 001601 TGTATTTTTA GCTAGATGCT ATTATAGTGT TGAAAGGATA TGGATTCTGT CTGGGATGCA TTTGTTGTCC TTTCAGAACC 001680 001681 CTTCCTCCCA TTACCCTGTG AATAAAAACA AATGGGACCC CCTGAGAAGG ACATCTTCCT ACAGTGATCA CCTCACCAGC 001760 001761 CCAGTGTTGT GGCTTTGTAG CGCACCCCGT ATCTACCATA TTCTAGAACA CTGTAATGCT ACTAGGCTGG CCCAGAAAAG 001840 001841 GTTTAAATGT TGAATTCACT TAAATTGCAA TTGTTGCACC ATCATGGAAT CGTGATGTGT ATTATTTATA TTGGCGGTGG 001920 001921 ACTCCAAGGT GTAGAGAAAA CTTGGGTCTT GGGTAATATG GACCATTTCA TCCTCAGACT TGTTAGGAGT ACATTTCTTG 002000 002001 GTCTTGAGAC CAGTATTTTT CAGTTATGTA TGCAACTGCC TTTATTACAC CTGGTTATCA CAATTCAATT CTCAGGTGTT 002080 002081 GCAGAAAAAT CTACCTCTTT CAGACTGTAG ATGGAAATAA CTGTGAAAAA AATGATGCAG ATATCTTCTA GTTTGTGCTA 002160 002161 AACACACTGC TTTATTTTTA CAGCCCACGT CTTTCATGAG GATACGAATT GTTAAGAGGC AGTCTCGTTT TGCTTTTCAA 002240 002241 AGACATTTTG TAGAGATTTT TCACTAATGT GAATCTGATT TTATCTACTT GATTCTGTAT AGATTAAGTA AATATGTATG 002320 002321 ATAAACTT |
Predicted Small Protein
Name | NONHSAT136388_smProtein_1655:1852 |
Length | 66 |
Molecular weight | 7694.7766 |
Aromaticity | 0.107692307692 |
Instability index | 88.02 |
Isoelectric point | 9.73028564453 |
Runs | 9 |
Runs residual | 0.0118269230769 |
Runs probability | 0.0413158256296 |
Amino acid sequence | MHLLSFQNPSSHYPVNKNKWDPLRRTSSYSDHLTSPVLWLCSAPRIYHILEHCNATRLAQ KRFKC |
Secondary structure | LEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEEELLLLHHHHHHHLLHHHHHH HHLLL |
PRMN | - |
PiMo | - |