NONHSAT136497
Revision as of 02:41, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT136497 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
826 nt |
Genomic location |
chrX+:23803377..23804327 |
Exon number |
2 |
Exons |
23803377..23803677,23803803..23804327 |
Genome context |
|
Sequence |
000001 GATTCTGCAG CTGCAACTTT TATGGAATGT TTTCCTTCTC CACATCTCAT GTGATGCTCT TATTACAGGA CACAGCATTG 000080
000081 TTGGTTTTGC CATGTACTAT TTTACCTATG ACCCGTGGAT TGGCAAGTTA TTGTATCTTG AGGACTTCTT CGTGATGAGT 000160 000161 GATTATAGAG GTACGATTGA GTTCGGAGCA GAGGGTCTGA AGAGAGTTCA GAGTTATAAA TGCTTACAAT GACTTTTTAA 000240 000241 ATTGTACTCT TTCTTTTTAG GCTTTGGCAT AGGATCAGAA ATTCTGAAGA ATCTAAGCCA GGTTGCAATG AGGTGTCGCT 000320 000321 GCAGCAGCAT GCACTTCTTG GTAGCAGAAT GGAATGAACC ATCCATCAAC TTCTATAAAA GAAGAGGTGC TTCTGATCTG 000400 000401 TCCAGTGAAG AGGGTTGGAG ACTGTTCAAG ATCGACAAGG AGTACTTGCT AAAAATGGCA ACAGAGGAGT GAGGAGTGCT 000480 000481 GCTGTAGATG ACAACCTCCA TTCTATTTTA GAATAAATTC CCAACTTCTC TTGCTTTCTA TGCTGTTTGT AGTGAAATAA 000560 000561 TAGAATGAGC ACCCATTCCA AAGCTTTATT ACCAGTGGCG TTGTTGCATG TTTGAAATGA GGTCTGTTTA AAGTGGCAAT 000640 000641 CTCAGATGCA GTTTGGAGAG TCAGATCTTT CTCCTTGAAT ATCTTTCGAT AAACAACAAG GTGGTGTGAT CTTAATATAT 000720 000721 TTGAAAAAAA CTTCATTCTC GTGAGTCATT TAAATGTGTA CAATGTACAC ACTGGTACTT AGAGTTTCTG TTTGATTCTT 000800 000801 TTTTAATAAA CTACTCTTTG ATTTAA |
Predicted Small Protein
Name | NONHSAT136497_smProtein_26:154 |
Length | 43 |
Molecular weight | 4632.5536 |
Aromaticity | 0.0714285714286 |
Instability index | 47.5095238095 |
Isoelectric point | 7.84637451172 |
Runs | 8 |
Runs residual | 0.0143158529234 |
Runs probability | 0.0460386857446 |
Amino acid sequence | MFSFSTSHVMLLLQDTALLVLPCTILPMTRGLASYCILRTSS |
Secondary structure | LLLLLHHHHHHHHHHHHHHLLLLLLLHHHHLHHHHEEEELLL |
PRMN | LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLL |
PiMo | ooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiii |