NONHSAT136940
Revision as of 02:42, 17 October 2014 by 124.16.129.48 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT136940 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1517 nt |
Genomic location |
chrX+:48432836..48436804 |
Exon number |
2 |
Exons |
48432836..48432961,48435414..48436804 |
Genome context |
|
Sequence |
000001 GGGAACGTTC CGGGACGTTC TCGCTACGTA CTCTTTATCA ATCGTCTTCC GGCGCAGCCC CGTCCCTGTT TTTTGTGCTC 000080
000081 CTCCGAGCTC GCTGTTCGTC CGGGTTTTTT ACGTTTTAAT TTCCAGAAAC CAGGGTGGTT ATGACCGCTA CTCAGGAGGA 000160 000161 AATTACAGAG ACAATTATGA CAACTGAAAT GAGACATGCA CATAATATAG GTGAGACTTG GATATCGGCA TTGAGTGAAC 000240 000241 CTGTTTGTCA CACTCTGTCA TGACCCTCTC ACCTTTTCTG GCAAGACTGC TCTGCATTTC TGCTGCCCTC ATACCTCACC 000320 000321 CAGCCAACCT ACCAAACATT CCTAGCTAGG CCTTCCTTGC TCTCAGGTGC ATATCAGAGC AAGTTTGCTA GGGGGTGGGA 000400 000401 TCTGAAAACC CATCTCCTAT AATCTTCTAC TCTTGTGTGG GATGGAGGAA ATGAAGGTGT GTCCCTGTTG TCCAACCCTC 000480 000481 AGCATCTTCA TCAGCTCTAG GAGGTGAGCA TGTTGTCAGC TGTTACTTCA TGACATCACA ATTCTCCCCC TCTTGCTGTT 000560 000561 CCCAGATACA CAAGGAATAA TTTCTGATCC AGGATCGTCC TTCCAAATGG CTGTATTTAT AAAGGTTTTT GGAGCTGCAC 000640 000641 CGAAGCATCT TATTTTATAG TATATCAACC TTTTGTTTTT AAATTGACCT GCCAAGGTAG CTGAAGACCT TTTAGACAGT 000720 000721 TCCATCTTTT TTTTTAAATT TTTTCTGCCT ATTTAAAGAC AAATTATGGG ACGTTTGTAG AACCTGAGTA TTTTTCTTTT 000800 000801 TACCAGTTTT TTAGTTTGAG CTCTTAGGTT TATTGGAGCT AGCAATAATT GGTTCTGGCA AGTTTGGCCA GACTGACTTC 000880 000881 AAAAAATTAA TGTGTATCCA GGGACATTTT AAAAACCTGT ACACAGTGTT TATTGTGGTT AGGAAGCAAT TTCCCAATGT 000960 000961 ACCTATAAGA AATGTGCATC AAGccagcct gaccaacatg gtgaaacccc atctgtacta aacataaaaa aattagcctg 001040 001041 gcatggtggt gtacgcctgt aatcccagtg acttgggagg ctgaggcagg agaatcgctt gaacccggga ggcggaggtt 001120 001121 gcagtgagct aagatcgcgc cactgtactc cagcctgggc aacagcgaga ctccatctca aaaaaaaagg aaaTGTGTAT 001200 001201 CAAGAACATG ATTATCCAGC GGTATTTTCT AATTCAGATC ATCAAACTGA TTATATAGAA GAGTTGGCTT TAAAATGTTT 001280 001281 GCAAATGTCT TTTTTTTTTT AATACTGGAA GAAAAAATAT TCTGTTGTGT CTCATACAGT GCTTAGGATG TCTTTCACAG 001360 001361 AGCTTATTAA AAAGATGAAA CCTGAGAACA AACTGCTTTA TTCTTACTCA GCCCATTTTG CAAATTAAAA GTgggggcag 001440 001441 aggtgggcgg atcacctgag gtcaggagtt cgagaccagc ctggccaaca gggcaaaacc ccatctctac taaaaat |
Predicted Small Protein
Name | NONHSAT136940_smProtein_140:262 |
Length | 41 |
Molecular weight | 4501.0154 |
Aromaticity | 0.025 |
Instability index | 66.615 |
Isoelectric point | 4.71954345703 |
Runs | 7 |
Runs residual | 0.00302419354839 |
Runs probability | 0.0285789991673 |
Amino acid sequence | MTATQEEITETIMTTEMRHAHNIGETWISALSEPVCHTLS |
Secondary structure | LLLLHHHHHHHHHHHHHHHHHLLLHHHHHHLLLLLEELLL |
PRMN | - |
PiMo | - |