NONHSAT137376
Revision as of 02:45, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT137376 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
4098 nt |
Genomic location |
chrX+:67753022..67757119 |
Exon number |
1 |
Exons |
67753022..67757119 |
Genome context |
|
Sequence |
000001 TCAAGCTAAT TAGCTCCCCT TTAGATAAGT ACATGTTGCA CATGTGCACC TACTTGTAAT CTCAGATATT TATGCACACA 000080
000081 AGTGTGAAGG TTTTTCAGGG AGCAGAGCAT CTGGGACAGG CTGATTCTGA GCTAAACAGG GCTCCTTTAA GGCAATATGA 000160 000161 ACTGTTGCCT TCTATAAATT GCACATTGAG GAACTCTAAT AGACAAAGAT TAGGTGTCAG GCAGAAAACA CTCATTGTAA 000240 000241 ATATACTATT AGTTGATAAA CATAGGACTT TCTTATTCCC CAGTTTTTCT TTATCATATA ATTTAAATAT TTATTCATTT 000320 000321 TGTATTTAAA GACTACCTAC ACATAGATAT ATGATTCCAA AGTCATACTT TCTCCATCCC CACATTAGCC AAGTGAATAC 000400 000401 AGGGCCAAAT GGGTTCTTGG AATGATAATA ACAAAGCATT ACAAAGTGGG TCCCCTTGGT TCCAGCCTTG TCCAGAGTTT 000480 000481 TTGGTTATAT ATTTCTATTT ATTACAATTT ACCTTTTAAA TTGTAAAATA AACCTTTGTG TGGACAGAGC CAATGTTTCA 000560 000561 ATCTTGAATG AGTAAAGAAA ATACTTTGGA ACTGATCCTC ATTTTGAAAT TGGTTCTAAA TTATTATCCA TTTCCAATGT 000640 000641 CTGAAATTCT CTTACTTCCT GCTAAAACTC TCTTTCTGCC AAAGTTGTTT CGTAATCTGT CTCAATGACT ATAATGTAAA 000720 000721 ATTAAAGAAG TAACCATGCT TCTCAAGGGG GAATTAAAAG TGTTTATTGA ATTTTACTCA GGCTAATTGT TTGGTCAGAA 000800 000801 ATTCCTAAGG CCACAGCTTT GGGGGGTTCG TGTAGATGTA CATGGTGGGT GGGTTATAAA TATTGGGACT TAAGGCAGCT 000880 000881 TGTTCTATGT ATTTATCTTT GCTCTTGGGT GACTTAGGGA ATGATTTTAT TTGATTTAAC CTTCTTTCTG TTTGCCCCGA 000960 000961 GAATACTCGC CAGTGGCGCT TGCAGTTGTA GCATTTACCC CAAGATAACT TTGCCTACGA AATATTTCGC TTTTATTATT 001040 001041 TTCACATCAT TCTAGTATAT GGACTTTGGA AACAAAAGAC ATTGTTCTAT TTATAGCATT CTTTTTTTTT TTTAGTAGCG 001120 001121 GTATTTCCAT TTACAAAATA TAGTAACTCT TGATTACTGA AAATGTCAAA TCCTAGAAAA CGTAGCATGC CTATACATGA 001200 001201 TGTTAACATC ATTCTCGAAC AGTTGTTGGC CGAAGATTCA TTTGATGAAT CCAATTTTTT TGAAATAGAC AATTCTGATG 001280 001281 TTCTCTTTAG AAATAACTCA GTTTTTATCT TTTTTCACAT TGAAAATCAG TTAGATTTGC TTAAGCCTCA AAGAGAATGT 001360 001361 TTATGTAAAT TAGCGCTGGC AATTTTTTTT TTTCTAAACA GGAAAAGGGT TAAATGAAGG TTGATAAAAT GGATGTTCAA 001440 001441 TTGTCTTTCT GAAAGTGAGT GGCTTGAAGG GATGAATAAA TATTTTCTTA ATATATTCAA AAAAGTGCAT TGCTTTCTGT 001520 001521 GATGGAAGTT AAGACCTAAA TGTCTGGAAG TTGTAACCCT CAACACAGCT TTTCCTGATT TGCTGCAAAG GCACATAGCT 001600 001601 GATTATAGAA GTGAAGACGG CAAGGACGGG GACTCCAACA AAGGAAACCC TGTTGCAGGA TTTGGGAACT TTCATGCTTC 001680 001681 AGATGAAATT CAGGCATGTG AGCATCACTG CAGAATGTGG TGCATCATTG CCATCATGAG TAATCACTTG CTGCTCCTAC 001760 001761 TTCTGAGACC AAGACTCTTT TGTCATATTC TTTAGCAATA GGACGGGTAA AGACTGGATT TAATTGCTGT TCAGAGTATA 001840 001841 AAAACTCAAT TGATTCCAAC ATATCTGAAT GTGCAGTAAA GTCTTAAAAG TCAACCGTTA ATCATTAAGT CTTTTGCCTC 001920 001921 TAAAGTCTTT TGCCTCTGAA GAGGTTTATT ACATGAGTTG ATTTTCATAT TTTCATTTTG GTGGGGTTTT CCTGTTGTTG 002000 002001 GGCAAGGTGG GGTCACAGGA CATGGGACTA GTAAGCATTT TACTGTTTAC TATATTTGTC TTTTTATAAA CAGTATCTCC 002080 002081 CAAAATGTGA TTAGAAGGCT ACCAAGCCTG TATTTGGACA TTTAATTGTG TGCTTTATAT AATGTAACTA CTAACAGTAT 002160 002161 TTGGACTGCC TGTTCATTCC TGGAGACAAA AATGAAAATC TGTCAGTTCA AGTTCTTGGG TAACATCAAG TCATTAGAAT 002240 002241 TTATCTAAAG CTTATCATGA TTTGATAAGA CATCCATTGC ATGCAGCTGT TTTAGCTCAG TGCAAAACAC TGAAATTGTG 002320 002321 ATTCTTAGAC TGTTTCTGAG ACATTTGGAT GGAAATAAAT GTATAAATGT TAATTCATGT ATATAAATTA GAAACACTTT 002400 002401 TCTAGATTCT GTAGGCTTTT GTTAAAAATA GAGAATTTCT TGGGGTTTAC TTAGGCCACA GAATGGCCAA ATAATAATAA 002480 002481 TGACAATGAT ATTACTAATA ATAATAGCTA ACCTTTATTT GGCACTTACT GTGTGCCAGG CACTATTCTA TTTTTTTAAG 002560 002561 AATTTTTAAA ATAACAGCTT TATTGAAATA CACTTTACCA TAAACTTCAC CTTTTTATTT TTTATTTTTA TGAGACAGGG 002640 002641 ACTCACCCAG GCTGGAGTGC AGTGGAGCAG TCATGGCACA CTGTAGCCTC GACCTCCCTG GGCTCAAGCA ATCCTCCCAC 002720 002721 TTCAGTGTCC CGAGTAGTTG GGACTACAGG CATGCGTCAC TACACCTAAT TGGCTAATTT TTGTAGTTTT TGTAGAGATA 002800 002801 GGGTTTCGCC ATGTTGCCTA GGCTGGTCTT GAATTCCTGG GCTCAAGCGA TCCACCTGCT TTGGCCTCCC AAAACAGTGG 002880 002881 GATTGCAGGC GTGAGCCACC ATGCCTGGCT GAAATTCACC TTTTAAGATG TACAATTCAG TGGTTTTTAG TATATTCACA 002960 002961 CACAAAATTG CACAACTATC ACTAACATCT AATTTTAGAT CATTTTGTAA CTTCACCAAG AAACCCCAGG TCTGTCAGCA 003040 003041 GTCAGTTCCA TTCCCCCTTC ATCCCAGCCT CTGGCAACCA CTAATCTGCT TTCTGTCACT ATTGATTTGG CCAGACACTA 003120 003121 TTCTTCTGTG CTTCTCATGC ATCTCCTGTA ATACCAGTGC TACAATTCTC ATTTTATGTG GAAAATTGAG GCACTGAGAG 003200 003201 GTTAAGTAAA TTGCCCACGG TCACACAGTA ATTTGATTTA CAACAGTAAT AACACATTAG ATGAGAACAC AGTAGGACAC 003280 003281 AATTTTGAAT TCCATTTTTA TGTACCTGAA ATGAATACAC CCCTCCCCCA AGGTATTTTC CCTATTGTTA GCCTTTGTAC 003360 003361 CCTAGGTACA AATATAGGTA TTTTCCCTAT TGTGTTATGT ACCTGAAATG AATACACCCT TCCCCCAAGG TATTTTCCCT 003440 003441 ATTGTTAGCC TTTGTACCCT AGAACTGACT GGATGTAGAT AACATTTGTT TTCAGAGTAA TGGAACACTG TATCAGCAGC 003520 003521 ATCTGAGAAC ATAAGAACAG TTGGACATTG GAAAGAGGTT TGTTGCCCTC ATCCCTCCTT GAACCTCTTT TCTCTCCCGC 003600 003601 TTCCACCACC ACCACACATA TATACCCCTT TTTCTCAGTC TTAAGCATCA AACAATTTCT GCCTCTTTCT TTTTAATTCT 003680 003681 CCCAGAGGGA TGGTTAATGC ATCACAATTT AACTTGTCTA TTCAGGTATT AATAGTCAAG GGATGCATCT GTTTGCTTAT 003760 003761 AGTACCAGTT ATATTCCTAG GACCTTAGAG AGCAGTAGTG TGAGAATAGA ATGCCTTTCT ATTTGGGTTA AACTATGTGG 003840 003841 GAGGAAAAAG TAACAGAGTA AAGGCTTTGC CTTAATGAAG TCAAGTGTTC TGCCTGGTGG GAAGTGGCCA CACGCTGCAC 003920 003921 TGCGCTGCTC TTGTTTACTC TGTTCTTTCA GAGCCTTTGT ACTTTGCCAT CACTGCTAGT AATTTCTTGG TCCTTTTCAA 004000 004001 TACTCCATTT TAATCTTGAT TTTTTTCTAT AAATAATAAA TCTGTGAAAA ATCTGTAAAA AGATTTGTGA CTATTAAATG 004080 004081 TGCAACTAAA AACACTGG |
Predicted Small Protein
Name | NONHSAT137376_smProtein_2927:3196 |
Length | 90 |
Molecular weight | 10152.0229 |
Aromaticity | 0.123595505618 |
Instability index | 48.4438202247 |
Isoelectric point | 9.01116943359 |
Runs | 14 |
Runs residual | 0.0141000220313 |
Runs probability | 0.0435561612033 |
Amino acid sequence | MYNSVVFSIFTHKIAQLSLTSNFRSFCNFTKKPQVCQQSVPFPLHPSLWQPLICFLSLLI WPDTILLCFSCISCNTSATILILCGKLRH |
Secondary structure | LLLEEEEEHHHHHHHHHHHHHLLHHHHHLLLLLLEEELLLLLLLLLLHHHHHHHHHHHHL LLLEEEEEEEEEELLLHHHHHHHHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHH HHHHHHHHHHHHHHLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTT TTTTTTTTTTTTTTiiiiiiiiiiiiiii |