NONHSAT137659
Revision as of 02:46, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT137659 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2754 nt |
Genomic location |
chrX-:74588262..74591027 |
Exon number |
2 |
Exons |
74588262..74590358,74590369..74591027 |
Genome context |
|
Sequence |
000001 TTTATGACAG ACAAGCCTTG TCTTCTATTC ATATAGATAT GCACCTTTTT CTACATGTAT GGCCTTTACT TACTACACAG 000080
000081 CAAGTAGGCC TCAAAGTAAT CTTCCTCTTT CCCATCAATC ATCTTCTGCC AAGCATTCAG GCAGAGCAGC TGTTAACAGT 000160 000161 GATTCAAAGT CAGAAAAACA TCAAGAACTT CTTTGATGCA TAGGGTGTAT CAGCACTCAG CTCCCACAGA AGTCAAGTCA 000240 000241 CAAAATATAG TGTCAGTTAA CTATAAGGAA GTTCCGGAGA GGTAAAGCTC AGGAAAGATG TAATGCAAAG CTGATTGTTT 000320 000321 AATGTCTTAC AGATTTACAC TGTCTTTAAA AGGCCAAATA AGGCTGGGCG CAGTGGCTCA CACCTGTAAT CCCAACATTT 000400 000401 TGGGAGCCCA AGGCGGCCGG ACCACCTGAG GTCGGGAGTT CAAGACCAGC CTGACCAACA TGGAGAAACC CTGTCTCTAC 000480 000481 TAAAAATACA AAAATTAGCC AGGAGTGTTG GTGCATGACT GTAATCCCAG CTACTCAGGA GGCTGAGGCA GGAGAATCGC 000560 000561 TTGAACCTGG GAGGTAGAGG TTGTGGTGAG CTGAGATCGT GCCATTGCAC TCCGGCCTGG GCAATAAGAG TGAAACTCTG 000640 000641 TCTCAAAAAA AAAAAAAAAG CCAAATAAAT CAGGGTTTTA CCAGGGGCTC AGAGATAAAA AGAAAACCTA TTCCTATCTT 000720 000721 AGCATTTTGG TCTCATTGGT TTATAGACTC TGATAATATA CCTATCCATG GATCATTTGA GTATTGACTA ATGTACATAG 000800 000801 GTACCCAACT GGTTTATTAT TAATCAAGAA TACAGAATTT TATTTAATAA TTAGCACACC CTGATCTGGC TTCTTTGCTT 000880 000881 GGTTTTCTTT GGATCCCTGT CCAATAACCT CTGTGGAATC TCATTCCCTA ATTGTTGATA CTCATTTTCT CCGTTTGCAA 000960 000961 AATGAAGATA CTCATTGTTA GGATCCTACT GCTGAAGGGT GCTATGTCAC TTTCTAGTGC TCTTATATGT CTTTAATTAT 001040 001041 AGGACTGGAA TGAAAAGCTT AACCATACAG TATTTCTAAG CAAAATAATG TACTCCATTC TTTTGTCCAT GCTCTCATTG 001120 001121 CTGATTTGTT CTTGCAGGAC TTAGAGCACT TTGTTAATGT TCTTCCATTC ACTCCAACAG CGTCCTCAGA AAGAGACAGA 001200 001201 ATAAAAAAAT TGTTCCCCAT GGTACAGCTG GAAAAATTAA GGGGAAAAGA GATTAAGTGG TCCCCAATGG AACACAGCTG 001280 001281 TCTTATGCAG GGCTCACAGT TACCATGTTC AGTACATTGT TAAAGTAACT TGGCTTCCCA GGACTGGAAT TATCATGGAG 001360 001361 CAGTTAGAAT TTTGAGAGTA ATTACAACAG GATCACATTC TGAAAGAGTC ACATTTTGTC AAAAATCTGA AAAGTATGCA 001440 001441 ATTTGTACAA CTCTTACTTT CTATGTGATA AGAATGCAAT ATGTGCCTCT TTCCCCTACT AGCCCCATGT GACACATATT 001520 001521 TTTCACACTA TGTGCCATCA ACCAGTGCCA TTACCTCCTG TGGCACCATA GAGCCCAATC TCAGGGCAGA CATTGCCAAG 001600 001601 GTAAAGAATG CACTCCATGT TTATACCAAA TTGCACAAAG TATAGACATT GAGGTTAATG GAGATTTAAG CACAATCCTA 001680 001681 GCAAGTAAGT TTTAAGAATA CTGAATATTA TACATTATTG TAACATGAAC CTAAAATTAA TTTAACAGGG CCCAAATTCA 001760 001761 TAGGAATGTA ACAGTCATTG AAAGCCTATT CTTTTCACCT CTCATCACAC ATATCTACAT ACATGTATGC ACATGTACAC 001840 001841 ACACACACAC ACACACACAC ACATACACAT TTTCTCCAAA GCAGGCTGCC TCTTCAACAG GAGCAAATAC TTTAATTTAA 001920 001921 AAGAATGATT ATCTGTTTTC TCCTTTTAGA AAAAGAGTCT AAGAAACACA GCATGTGAAG AACATTAGAT TTATACATTC 002000 002001 CAGAATCTCT GCTCTCAGAG TAGCTAAGAG ATTCGGTACA GAAGACGTTC TATGGAGAAG CACAGGGGGC ATCTAATGAG 002080 002081 ATTGTCAGGC CCTTGGACAA GATCCATATT CTTAGAAAAT TAATGAGTTC CATCTCGTTA GGAATTGGTT GATGAGGTAT 002160 002161 GGTACATCTG CATTTCTTTA ACCATAGCTG TAATGTACCA TATTAAATTG TAGCCTTTTG CATGCGGGTA TTATATAATA 002240 002241 ATGAATGGGT GGCTCCTAGT AGCATGCAAC CCATGACTGT TTACTTCCCT AAAAGGGTTA GGTCTGTGTC CTGCACAGTG 002320 002321 TTCAAAACCA TTAAATGTGT TCTTTGTAGC AGGATGGTAC ACAGCCATCA GCAGAATGAG TTAAAACCAA CAACGAATTC 002400 002401 AATATACCAG GAAATAGATT GTTAGTAGGG AATGGCATTA AAGGAAAAAA AAATTAGATA AGATGCATTC AAGGAATAAT 002480 002481 TACTTTCACT CTGCTGGCTT AATCAGTGAA GGAACATAAA AGGAAAGCTG GCAGTGGGTC TTGGTAATAT ATGAACTATA 002560 002561 TTAGAGTGCC AGAAAAGGAG ACCTCAGAAG TTAAGCATAG GTTGCCAATC TGCTACAATT ATTTTTCCCA CCAATCTGCT 002640 002641 CAAAATGATT GTATATAGTA TTCTTAAAAC CATGTGTCTT GGTGCAGAAA TATCGACAAA TGCTGGCCAG CTTTATCTTC 002720 002721 CTATATCCTT CATTAAAAGT ATATGCATAT AAAG |
Predicted Small Protein
Name | NONHSAT137659_smProtein_38:202 |
Length | 55 |
Molecular weight | 6284.4164 |
Aromaticity | 0.111111111111 |
Instability index | 48.5166666667 |
Isoelectric point | 8.31317138672 |
Runs | 8 |
Runs residual | 0.0145438121048 |
Runs probability | 0.0424284578696 |
Amino acid sequence | MHLFLHVWPLLTTQQVGLKVIFLFPINHLLPSIQAEQLLTVIQSQKNIKNFFDA |
Secondary structure | LLEEEEEEHHHHHHHLLLEEEEEELLLLLLHHHHHHHHHHHHHHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiii |