NONHSAT137842
Revision as of 02:47, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT137842 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1817 nt |
Genomic location |
chrX-:93930774..93957414 |
Exon number |
7 |
Exons |
93930774..93931065,93941157..93941332,93947494..93948000,93951884..93952099,93952895..93953008,93953767..93953869,93957006..93957414 |
Genome context |
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Sequence |
000001 AATAGAAAAA AGTTGCAATT CCTTGCCTCC ACTGTGAGAC AAACCCCAAC CACATCTCTA GCACACAAGA ACTTCCAAAT 000080
000081 GCCTGAACCG CAGCGGCCAG GCGTTCCTCC AGTACCGCCT CCCCCAGGAG CTTGCTACAA GTGCCAGAAA TCTGGCCACC 000160 000161 AGGCCAAGGA ATGCCTGCAG CCCAGGATTC CTCCTAAGCC GCGTCCCATC TGTGCGAGAC CCCACTGGAA ATCGGACTGT 000240 000241 CCAACTCACC TGGCAGCCAC TCCCAGAGCC CCTGGAACTC TGGCCCAAGG CTCTCTGACT CCTTCCCAGA TCTTCTTGGC 000320 000321 TTAGCGGCTG AAGACTGACG CTGCCCAGTC GCCTCGGAAG CCCCCCTACA TCATGGACGC TGAGCTTCAG ATAACTCTCA 000400 000401 CAGTGGAAGT GTTGCTCACA CAAAGCCTGT TTGGTGGTCT CTTCACACGG ACGCGCATGA AAAAGCCTTT GCTAGATTTT 000480 000481 TTGCTCACTT GGTACTGAAG ATGAAAAAAG AGTTTGGTCC AGAGAGCTGC CTTAGACTCC CCAGTAAATC TATTCAAACA 000560 000561 GCTGCCTCTG TTACCTTGAC TCGTCTCAGA TGTCATCGAC CTGAGATGGC TCCTGGCGCA AGGAAGACAT TAAGGGAAAT 000640 000641 TTTCAAGACA AAATTCCAAT TCAGCTACTT ACCTAAGAAT GAAGCCCTGG CTGAAGACTG CTCTATACAA TCTTAGAAGC 000720 000721 AGGAAAAATT CAAACTCTCC ATTCCTGTTG GAAGTGAGCT GAAACTTCAA AAAAGAGTTG CCATCCATCA TCATAGAAGC 000800 000801 AGGAAAATTC ATCTTCCTTG TTGAAAATAA GTGAAACTCC AGGGCATTCC AGAGTCAACC TAAAAATCAA GTTCAGGCCA 000880 000881 TGATGGAAGA GACGGAGTTG GACATGCCTC ATTATTCCCT ACTGCCTTTT GGAACTCAGG AAAAGCTGAT CAGCATTAAC 000960 000961 ATCAACACAG ACCTTAGTCT GATAAGAAGC ATTTATAATC TATTGTCTCT GAAACTTGCT ATTTGGTGGC TTCGTCTGCA 001040 001041 TCATAAAACT ATCTCCAAAA ACCCTCATTT TAACCTAGAC ATTCTTTTCT ATTGATATAA CTCTTTCAAC CAATTGCCAA 001120 001121 TCAGAAAAGT TTTAAATCTG TTTATGACCT GGAAGCCCCC ACTTTGAATT GTTCCACACT TCCAGATCAA GCCAATGTAA 001200 001201 ATCTTATATG CATTGATTGA TGCATTATGT CTCCCTAAAA TGTACAAAAA GCTAGCTGTA CCCTGACCCC ATTGGGCACA 001280 001281 TGTCATCAGG ACCTCCTGAG GCTGTTTCAC AGGCATGTCT TTAACCTTGG TAAAATAAAC TTTCTAAATG AGGGATTCTA 001360 001361 ACTATTTGAG GAACTGCTAG ATTCCACAAT GCCTGATAGA CTGCTCTCAT CTCACAACAG CTGTTTGGCT TGAGGGAAGC 001440 001441 AGTTTCAACG TGAACAAGCA ACATCCTGTT TGAAAGCTGC TCCTCTGATT AAAGAAGAGT CAGGGAAATC TAGTGAAATA 001520 001521 TGTTTGCTCA TTGGTGGAAG TCACTTGCCT TGTATCAGAT GAGACTACAG ACTTGGACTT TTAGGTTAAT TCTGAAATGA 001600 001601 GTTAAGACTT TGGGGAACTG TATGGAAAGC ATAATTGTGC TTTGAAATGT GAGAAAAATG AGATCTGACA GGGGCCAGTG 001680 001681 GCAGAATGAT ATGGTCTGGC TCATGGCAAT TCCCCCATGC TATTTTCATA TTAGTGAGTG AGTTCTCATA AGAGCTGATG 001760 001761 GTTTTACAAG GGGATTTCCC CCCTTTCACT CTCCTCTCCT CTCTCCTGAC ACCCATA |
Predicted Small Protein
Name | NONHSAT137842_smProtein_500:715 |
Length | 72 |
Molecular weight | 8073.3392 |
Aromaticity | 0.0704225352113 |
Instability index | 58.8464788732 |
Isoelectric point | 9.66082763672 |
Runs | 9 |
Runs residual | 0.0217939214233 |
Runs probability | 0.0425523562779 |
Amino acid sequence | MKKEFGPESCLRLPSKSIQTAASVTLTRLRCHRPEMAPGARKTLREIFKTKFQFSYLPKN EALAEDCSIQS |
Secondary structure | LLLLLLLLLLLLLLLLLHHHHHHHHHHHHLLLLLLLLHHHHHHHHHHHHLLLEEEELLLL HHHHHHLLLLL |
PRMN | - |
PiMo | - |