NONHSAT137904
Revision as of 02:47, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT137904 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3216 nt |
Genomic location |
chrX-:100145477..100149618 |
Exon number |
2 |
Exons |
100145477..100147337,100148264..100149618 |
Genome context |
|
Sequence |
000001 TCTACAAAAC ATTTAAAAAT TAGCTGGTCA TGTTGCTGTG CACCTGTGGT CCCATCTACT TGGGAGGCTG ATTACTCCCC 000080
000081 TGCCATCGCT TGAGCCCCGG GAGTGGAGGC TGCAATGAGC TATGGTTACA CCACAGGCTG AAAAAAACAT AAATGCATTC 000160 000161 AAATGCAGAT ATCAAAATAT TAAAGATGCA ATTTATGACA TTAACATGTG CTTCTTCACC CTCAGGTTTA TTAAGGTATG 000240 000241 ATTGACAAAA TTGTATATAT TTATGGTGTA CAGCATGATG TTTTGATATC TGTATGTATT GTGAAATGAC CAAGTCAAGC 000320 000321 TAATTTAAAT ATAATTATCT CACGTACTTA TTATTATTAT TTTGAGACAG AGTCTCGCTC TGTTGCCCAG ACTGGAGTGC 000400 000401 AGTGCCGCAA TCTTGGCTCA CTACAACCTC CCCCTGCCGG GTTCAAGCAA TTCTCCTGCC ACAGCCTCCT GAGTAGCTGG 000480 000481 GATTACAGGC ATGCGCCACC ATGCTAGGCT AATTTTTGTA TTTTTAATAG AGATGGGGTT TCACCATGTT GGTCAGGCTG 000560 000561 GTCTCAAACT CCTGACCTTG TGATCCGCCT GCCTCGGCCT CCCAAAGGGC TGGGATTACA GGCATGAGCC ACCGCACCCG 000640 000641 GCCTACTTTT TAAAAAATTT TTATTTTAGA TTCAAGTAGT ACATGTGTAT GTTTGTTACA TGGGAATTAA ATGTGTAATG 000720 000721 GTGAGGACTG GGCTTCTAGT GTACACATCA CCAAAATATT GAACATTGTA CCCAGTAGGT AATTTTTCAC CCCTTCCTCC 000800 000801 TCTCCCACTC TCCCTCCTTT GGAGTCCCCA GAGTCTATTT GCCCCATCTT TATGTCCATG TGTGCCATTT GTTTAGCTTC 000880 000881 CCCTTGTAAG TGAGAACATG CACTATTTGA TATTCTGCTT CTGTGTTGGT TCACTTAGGA TAATGGCCTT CAGCTGCATC 000960 000961 CATGTTGCTG CAAATGACAT TATTTTGTTC TTTATTGTGA CTGTGTAGTA TTCCATGGTG TATCGCCACC ACATTTTCTT 001040 001041 TATCCAATCA ACTGTTGGTG GACACTTAGG TTGGTTCCAT GTCTTTGCTA TTGCACATAA TGCTGTGACA AACATATGTG 001120 001121 TGCAGGTGTC TTTTTTATAC AATGATTTCT TTTCCTTTGG ATAGATATAC AGTAGTGGGA TAGCTAGATT GAATGGTAGT 001200 001201 TCCCTTCTTA GTTCTTGGAG ATATCTCCAT ACTGTTTTTT TGTAGAGGTT GTACTAATTT ACATCCTCAC CAACAGTGAT 001280 001281 ATACTTACCA TTTTTGTGTG GTGAGAACAT TTAAGATCTA CTCTCTTAGC AATTTTCAAG TATATAATAC ATTATCAAGC 001360 001361 ATTAAACCTT TGTGTTACAA ATATTCCCAT TATACTCTTT TAGTTATTTT TACTTATACA ATTAAATTAT TATTAACTAT 001440 001441 AGTCAGCATG TTTTGCTATC AAATACTAGG TCTTATTCAT TCATTCAAGC TATTTTAATT GAGTTATTTG TTTTCTTTCT 001520 001521 AGTGAGTTGT TTGAGTTCCT TACATATTTT GGATATTAAC CCCTTATCAG ATATACTGTT TGCAAATATT TTCTCCCATT 001600 001601 CTGTAGATTG TCTCTCTTTG TTGATTATTT CCTTTGCTGT GCAGAAGCTT TTTAGTTTAG TGCAATTCTA TTTGTCTAGT 001680 001681 TTTGCTTATG CTTTTGGGGT CATATCCAAA AATTTATTGT CTAGACCAAT GTCAAGAAGC TTTTAAATTA TGTTTTCTTC 001760 001761 TAGTAGTTTT GCAGTTTCAG GCCTTATGTT TAAGTATTTA ATCCATTTTG AGTTTTTTTT AATATAGTAT AAGATAAGGG 001840 001841 TCCAGTTTCA TTCTTCTGCA TGTGGATATC CAGTTTTCCC AACACCATTA ATTTTTTTAA CTTACTTTCT TTCTTTCTTT 001920 001921 CTTTCTTTCT TTCTTTCTTT TCTTCTTTCT TCTTTCCTTC TTTCCCTTTT TTATGAATAG AGATGGGGTC TCACTATATT 002000 002001 GCCAAGGCTG GTCTCAAACT CCTGGGCTCA AGTAATCCAC CTGCCTCGGG CTCCCAAAGT GCTGGGATTA CAGGCATGAG 002080 002081 CACCATGCCT GGCCCCCAAA ATCATTTATT GAAGAGACTG CTGTTTCCCC ATTGGTACCT TTGTTAAATA TCAATTGACC 002160 002161 ATAAATGTGT AGATTTATTT CTGGACTCTT ATTCTGTTTC CTTAGTCTAT ATGTCTTTTT TATGCCATTA CCATGCTGTT 002240 002241 TTGGTTACTA TCTCTCTGCA GTATAATTTG AAATCGGGTA ACATAATTCC TCCAGTTTTG TTCTTTTTGT TCAGGATGGC 002320 002321 TTTGGCTATT CTGTGCCTTT TGTGGTTCCA TGTGTATGTT AGTATTTTTT ATTATTATTG CTGTGAAAAA TGTCCTTGGA 002400 002401 ATTTTGATAG GGATTGTATT GGCTCTATAG ATCACTTTGG GTAGCATGGA CATTTTAACA ATATTGTGTG TTCTTTTTTA 002480 002481 TTAACCTAGC AAATAGCACG ATCTAGAGCA GGTCTATAAT CATCACAATT TTTAAATAGT GATGAGCATA ACTGATCTTA 002560 002561 TGAGATATTT GCAACAGCTA TAATGTGATA TGAAAATATT TTTGATATAT GTTGGTGAGA AAGTTGCAGA CACTGATAAT 002640 002641 AAGACTATAA TTTGTTGACT ACATTCAATT AGAAATGAAT AAAAATAAAG GTTTAATTTT TCCCATCAAA GTCCAAAGAG 002720 002721 CACCCCTAAA TTCTATTCAC AGAACCTCAG GGGAGGAAAT CTTGTACCAG AGAGTCCATT AATTAGTATA AAGGATGTAA 002800 002801 GAAATAATAT TTCATTGGTG AAATGAATTC TGTTAAAAAT ATGTGCAATG GCTAGAAATT TTGTCCATGT ATGAAGGTAC 002880 002881 ATGCTTGCAT GAATAAAAGA TAAAAATCTG GCAAGCCAGC CCAACAGTTC AGCATGTTCT GGAATGGCAT CTAGGCCTCA 002960 002961 GACTTTGTGT GATCCTATAA AGAGCCAGCT TGCCAGATGT CCCTAGTGAT AATAAATGTT ATTTTCAGCC ACTACATGTT 003040 003041 GGGGGTAATT TGTAACACAG CAATAAATAA ATAAAATAAA TAAATAGTAT CACGTAATAG AAGATTTTCC TGTTCCAACC 003120 003121 AGAAGATAGG TTGATCCTGT TACCATAATA TTAGGCCAAC TATTTCATGT GGATTTTTTA TGTAAAGGAC TTGCTGGAGT 003200 003201 TCCTAAAGAT CAGAGC |
Predicted Small Protein
Name | NONHSAT137904_smProtein_2210:2443 |
Length | 78 |
Molecular weight | 9121.7583 |
Aromaticity | 0.207792207792 |
Instability index | 54.5962337662 |
Isoelectric point | 6.86358642578 |
Runs | 6 |
Runs residual | 0.0581592320723 |
Runs probability | 0.041379614909 |
Amino acid sequence | MSFLCHYHAVLVTISLQYNLKSGNIIPPVLFFLFRMALAILCLLWFHVYVSIFYYYCCEK CPWNFDRDCIGSIDHFG |
Secondary structure | LLEEEEEEEEEEEEEEEELLLLLLLLHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEELLL LLLLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLL LLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTiiiiiiiii iiiiiiiiiiiiiiiii |