NONHSAT137904

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT137904

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3216 nt

Genomic location

chrX-:100145477..100149618

Exon number

2

Exons

100145477..100147337,100148264..100149618

Genome context

Sequence
000001 TCTACAAAAC ATTTAAAAAT TAGCTGGTCA TGTTGCTGTG CACCTGTGGT CCCATCTACT TGGGAGGCTG ATTACTCCCC 000080
000081 TGCCATCGCT TGAGCCCCGG GAGTGGAGGC TGCAATGAGC TATGGTTACA CCACAGGCTG AAAAAAACAT AAATGCATTC 000160
000161 AAATGCAGAT ATCAAAATAT TAAAGATGCA ATTTATGACA TTAACATGTG CTTCTTCACC CTCAGGTTTA TTAAGGTATG 000240
000241 ATTGACAAAA TTGTATATAT TTATGGTGTA CAGCATGATG TTTTGATATC TGTATGTATT GTGAAATGAC CAAGTCAAGC 000320
000321 TAATTTAAAT ATAATTATCT CACGTACTTA TTATTATTAT TTTGAGACAG AGTCTCGCTC TGTTGCCCAG ACTGGAGTGC 000400
000401 AGTGCCGCAA TCTTGGCTCA CTACAACCTC CCCCTGCCGG GTTCAAGCAA TTCTCCTGCC ACAGCCTCCT GAGTAGCTGG 000480
000481 GATTACAGGC ATGCGCCACC ATGCTAGGCT AATTTTTGTA TTTTTAATAG AGATGGGGTT TCACCATGTT GGTCAGGCTG 000560
000561 GTCTCAAACT CCTGACCTTG TGATCCGCCT GCCTCGGCCT CCCAAAGGGC TGGGATTACA GGCATGAGCC ACCGCACCCG 000640
000641 GCCTACTTTT TAAAAAATTT TTATTTTAGA TTCAAGTAGT ACATGTGTAT GTTTGTTACA TGGGAATTAA ATGTGTAATG 000720
000721 GTGAGGACTG GGCTTCTAGT GTACACATCA CCAAAATATT GAACATTGTA CCCAGTAGGT AATTTTTCAC CCCTTCCTCC 000800
000801 TCTCCCACTC TCCCTCCTTT GGAGTCCCCA GAGTCTATTT GCCCCATCTT TATGTCCATG TGTGCCATTT GTTTAGCTTC 000880
000881 CCCTTGTAAG TGAGAACATG CACTATTTGA TATTCTGCTT CTGTGTTGGT TCACTTAGGA TAATGGCCTT CAGCTGCATC 000960
000961 CATGTTGCTG CAAATGACAT TATTTTGTTC TTTATTGTGA CTGTGTAGTA TTCCATGGTG TATCGCCACC ACATTTTCTT 001040
001041 TATCCAATCA ACTGTTGGTG GACACTTAGG TTGGTTCCAT GTCTTTGCTA TTGCACATAA TGCTGTGACA AACATATGTG 001120
001121 TGCAGGTGTC TTTTTTATAC AATGATTTCT TTTCCTTTGG ATAGATATAC AGTAGTGGGA TAGCTAGATT GAATGGTAGT 001200
001201 TCCCTTCTTA GTTCTTGGAG ATATCTCCAT ACTGTTTTTT TGTAGAGGTT GTACTAATTT ACATCCTCAC CAACAGTGAT 001280
001281 ATACTTACCA TTTTTGTGTG GTGAGAACAT TTAAGATCTA CTCTCTTAGC AATTTTCAAG TATATAATAC ATTATCAAGC 001360
001361 ATTAAACCTT TGTGTTACAA ATATTCCCAT TATACTCTTT TAGTTATTTT TACTTATACA ATTAAATTAT TATTAACTAT 001440
001441 AGTCAGCATG TTTTGCTATC AAATACTAGG TCTTATTCAT TCATTCAAGC TATTTTAATT GAGTTATTTG TTTTCTTTCT 001520
001521 AGTGAGTTGT TTGAGTTCCT TACATATTTT GGATATTAAC CCCTTATCAG ATATACTGTT TGCAAATATT TTCTCCCATT 001600
001601 CTGTAGATTG TCTCTCTTTG TTGATTATTT CCTTTGCTGT GCAGAAGCTT TTTAGTTTAG TGCAATTCTA TTTGTCTAGT 001680
001681 TTTGCTTATG CTTTTGGGGT CATATCCAAA AATTTATTGT CTAGACCAAT GTCAAGAAGC TTTTAAATTA TGTTTTCTTC 001760
001761 TAGTAGTTTT GCAGTTTCAG GCCTTATGTT TAAGTATTTA ATCCATTTTG AGTTTTTTTT AATATAGTAT AAGATAAGGG 001840
001841 TCCAGTTTCA TTCTTCTGCA TGTGGATATC CAGTTTTCCC AACACCATTA ATTTTTTTAA CTTACTTTCT TTCTTTCTTT 001920
001921 CTTTCTTTCT TTCTTTCTTT TCTTCTTTCT TCTTTCCTTC TTTCCCTTTT TTATGAATAG AGATGGGGTC TCACTATATT 002000
002001 GCCAAGGCTG GTCTCAAACT CCTGGGCTCA AGTAATCCAC CTGCCTCGGG CTCCCAAAGT GCTGGGATTA CAGGCATGAG 002080
002081 CACCATGCCT GGCCCCCAAA ATCATTTATT GAAGAGACTG CTGTTTCCCC ATTGGTACCT TTGTTAAATA TCAATTGACC 002160
002161 ATAAATGTGT AGATTTATTT CTGGACTCTT ATTCTGTTTC CTTAGTCTAT ATGTCTTTTT TATGCCATTA CCATGCTGTT 002240
002241 TTGGTTACTA TCTCTCTGCA GTATAATTTG AAATCGGGTA ACATAATTCC TCCAGTTTTG TTCTTTTTGT TCAGGATGGC 002320
002321 TTTGGCTATT CTGTGCCTTT TGTGGTTCCA TGTGTATGTT AGTATTTTTT ATTATTATTG CTGTGAAAAA TGTCCTTGGA 002400
002401 ATTTTGATAG GGATTGTATT GGCTCTATAG ATCACTTTGG GTAGCATGGA CATTTTAACA ATATTGTGTG TTCTTTTTTA 002480
002481 TTAACCTAGC AAATAGCACG ATCTAGAGCA GGTCTATAAT CATCACAATT TTTAAATAGT GATGAGCATA ACTGATCTTA 002560
002561 TGAGATATTT GCAACAGCTA TAATGTGATA TGAAAATATT TTTGATATAT GTTGGTGAGA AAGTTGCAGA CACTGATAAT 002640
002641 AAGACTATAA TTTGTTGACT ACATTCAATT AGAAATGAAT AAAAATAAAG GTTTAATTTT TCCCATCAAA GTCCAAAGAG 002720
002721 CACCCCTAAA TTCTATTCAC AGAACCTCAG GGGAGGAAAT CTTGTACCAG AGAGTCCATT AATTAGTATA AAGGATGTAA 002800
002801 GAAATAATAT TTCATTGGTG AAATGAATTC TGTTAAAAAT ATGTGCAATG GCTAGAAATT TTGTCCATGT ATGAAGGTAC 002880
002881 ATGCTTGCAT GAATAAAAGA TAAAAATCTG GCAAGCCAGC CCAACAGTTC AGCATGTTCT GGAATGGCAT CTAGGCCTCA 002960
002961 GACTTTGTGT GATCCTATAA AGAGCCAGCT TGCCAGATGT CCCTAGTGAT AATAAATGTT ATTTTCAGCC ACTACATGTT 003040
003041 GGGGGTAATT TGTAACACAG CAATAAATAA ATAAAATAAA TAAATAGTAT CACGTAATAG AAGATTTTCC TGTTCCAACC 003120
003121 AGAAGATAGG TTGATCCTGT TACCATAATA TTAGGCCAAC TATTTCATGT GGATTTTTTA TGTAAAGGAC TTGCTGGAGT 003200
003201 TCCTAAAGAT CAGAGC
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Predicted Small Protein

Name NONHSAT137904_smProtein_2210:2443
Length 78
Molecular weight 9121.7583
Aromaticity 0.207792207792
Instability index 54.5962337662
Isoelectric point 6.86358642578
Runs 6
Runs residual 0.0581592320723
Runs probability 0.041379614909
Amino acid sequence MSFLCHYHAVLVTISLQYNLKSGNIIPPVLFFLFRMALAILCLLWFHVYVSIFYYYCCEK
CPWNFDRDCIGSIDHFG
Secondary structure LLEEEEEEEEEEEEEEEELLLLLLLLHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEELLL
LLLLLLLLLLLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLL
LLLLLLLLLLLLLLLLL
PiMo oooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTiiiiiiiii
iiiiiiiiiiiiiiiii