NONHSAT138334
Revision as of 02:49, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT138334 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2491 nt |
Genomic location |
chrX+:118827531..118830022 |
Exon number |
1 |
Exons |
118827531..118830022 |
Genome context |
|
Sequence |
000001 ATACTCTGCT CAGCGGCCGA GCTCTGCAGT TCTCCTCCCG GCCCCCGTTA CCCCCCTTCC TTTCCACCGA GATCCCAAGG 000080
000081 TGCTTAGATG GGTGCGCCTT GGCCGCTGGA GTCTCGATGC CCCACTGTCG TGTCTCCCTC CCTCCATGGC CCGGGAGCGC 000160 000161 AGCTGCGGCC GAGGTACCGG GTAGGCCTGC GGCACCTGCC GCTCCACAGT AGAGCTTAGA AAGGGGGCCC GTGGGGGGAG 000240 000241 CCGCACTGCA GCCCGGCAAC TGAGCTGAGC TGTGGCATGT GGGGTCCGAG GCTAGAGGTC TTGAGACGCT GCTTCTGCCC 000320 000321 TGGGGTTTCC AAGCCTTGGG TGCTGTGGGC TGTAATTTCG TGGAGCCAAG CTCACCACCT TTGGGTACCT AGTACAGACG 000400 000401 GAACCCACGC CTCCTCTCTC CGACCCAGCC CTAGACGCTC AGCAAGACCA CCCACCCCTT CTAGTACCAG AGGAAGGGCT 000480 000481 GGAGATGAAG GTTCTCAGCT CTATGGAGCG AAATGGAGGG GCGGGTGACG GGGAGCGGCC TCCAGTCACT CTGTCCCGCC 000560 000561 CCCTGATTTC TCCTTGACCC TCATTCAGCC CGGGACAAGG CGGCCAATAG GGCGCAGAGG AGAGAACTTC CGAAGGCAGG 000640 000641 GGTGCGCCCG CCCGCCCTCC TTATCCCCGT GGCCCACCTC CGCGGGTCCT CTCTCGTGGG CACCTCTCCA CTTCTCCGGC 000720 000721 CTTGGCGCCC CCCCTCTCTC TTGGGACTGG CCTCTTGCTA GCTCCCTGTC ACTGGAGCAC GCTGGCAGAT TTGGCATGCC 000800 000801 CGAGGCCCCA GCGGGAGGGA CAGTACATTC CACTCCTCAA AAGGGCAGGT TCCCTGGTGT GGGAGAGAGA CCTGGGCCCG 000880 000881 CCAGAGGGAC CCCAGATGGG GGAGGGGATG ACAAGGCTAT GGAGGAAACC CGGGCCCAAG AGGGGGCCCC AATGGAGCAT 000960 000961 GGAAGATGAC CCCGTAAAGG CCCAAGGCTG GAGCAGCTGA GGAGGAGGCA GGAGAGAGGG AAAAAGAAAA GAAGGAACCA 001040 001041 GGGAGAGAGA GGAAGAAGGG ACTCGATCCA GAGGCCCTGG TCTCGGAGAA GTCAGGGAAG ACAAGAAAAT GGAGTAGCCA 001120 001121 AAGAAGAGCA TGCCTGGCAC TTGGTTCCAC CTGCTGGATG GAGCTTCTCA CACTCTCTCG GGAAGCCCTT TATGTATGTA 001200 001201 CCCTGTGCGC CTGGAGAACA AGGACTCAGC AAACGCATCC CAGGGCCGAG TGCAGGGCCT CGCAGTCAGG AGGCACTCTA 001280 001281 TTAAGCTGAG GGCAGAGAAC TTGGATGCGT GCGAGGGGGG CGGGGAGAAG AAAGAAGAGA CACAGTGAGG GAATAGCAGT 001360 001361 AAGGACAGTC ATGAAGAGCC AAGTATTCAG GGAGCGCCAC TGTGCGCCTT CATTGTGCTG GAGACCCAGG AGCGGCCTAA 001440 001441 AGAGAAGAGC CTGGCAAAAT CAGGGATCAG CGCAGAGGAG CTCCGCGAGA CAGAAGGCGC AGGCCATAGG GCGGATGGCG 001520 001521 GTGGCAAGGA AGAGGGGCAG CTGGAGTCTT TCAGACTCTC TGGAGCTTTG GGGCAGGGCC TGAGCCCTGG ACTGGGTTGG 001600 001601 CAGTGACACG TGGGACCAGT GCTATATCTG AGGAACCACG GTGAGGCTTG GGCCCCAACC GCATGGGGGC GGGGAGTCAG 001680 001681 AGGTGACTGG CGGCTTCCAG GCTGGGTGTC TGGGACAGGG CTCTTCCCTG GCAAGGGCTA GGGCGTGGTG GACTGAAAGG 001760 001761 CCCCGAGGTC ACTAGCCCCG ATCTGGTCTT GGGGTTTGGG TGGTGGTGGG ACAAAAGGGG AGAATTTGGA AGCCAGAGCA 001840 001841 GAAAGCTGCT GCCGGAACGG GAGGGGACTG GAGGGCTGCG GGTCTCCCGG GAGAATCCCC CACACACTGC CCCGCCCGCC 001920 001921 TTAGCACTCC TCGCGGACTG AAGCTCCGTA CTTACCGGCC CAGCGCTGGG GGCACCTGAG CACGGAATCC TTGGTGTCTC 002000 002001 ATCCATATGC CCCATTCGGC CCTCCTGTCC CTAGAGACTA CCAGAACCTC ACTGCGTCCT CCTCCTCCAA AACGCTGAAC 002080 002081 CTCGAAGACC TGAACTAAGT GCTTAATTCA AGTCTCCTGG GACCCTTTGG TTCCTCCAAT ACCTGCCCAC CTGCGGCTAC 002160 002161 AAGTCCCTCC TGGGGCCTGG GCCTCCAGCC TCCTTCGGTG GGGTGTGGGT CAGTGTGTGT GTTGGTCTTG ATGTGTGAGT 002240 002241 AGATGTGTCG GTGTGTTCGT GTGTATTGTC AGTGTGTGCT AGCTGTGTGT CTGTATATCT GTGTGTCAAT GTGTGTGTTG 002320 002321 GCATGTGTTG GTGTGTCAGT GTATTTCAAT GCATGGTGAG TGTATGTGTG TCAATATGGA GAGAGGTGTT AGCTCACTAG 002400 002401 CTTTACATAC CTTATCTCAC TCAGTGCAGT GGGCCGACGA CTGAGACGTG TGAATCAGAA CATTCATTTC AATAAAGAGG 002480 002481 TTTGGAAACT C |
Predicted Small Protein
Name | NONHSAT138334_smProtein_1304:1582 |
Length | 93 |
Molecular weight | 10501.0217 |
Aromaticity | 0.054347826087 |
Instability index | 60.9304347826 |
Isoelectric point | 12.2002563477 |
Runs | 12 |
Runs residual | 0.00477009696591 |
Runs probability | 0.0491152917624 |
Amino acid sequence | MRARGAGRRKKRHSEGIAVRTVMKSQVFRERHCAPSLCWRPRSGLKRRAWQNQGSAQRSS ARQKAQAIGRMAVARKRGSWSLSDSLELWGRA |
Secondary structure | LLLLLLLLLLLLLLLLLEEEEEEHHHLEEEELLLLLLLLLLLLLHHHHHHHLLLLLLLLH HHHHHHHHHHHHHHHHLLLLLHHHHHHHHLLL |
PRMN | - |
PiMo | - |