NONHSAT138645
Revision as of 02:50, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT138645 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1078 nt |
Genomic location |
chrX-:133906109..133931217 |
Exon number |
11 |
Exons |
133906109..133906313,133915851..133915947,133919916..133919977,133921502..133921563,133922760..133922861,133923115..133923169,133923253..133923296,133923610..133923666,133927845..133927923,133930138..133930385,133931151..133931217 |
Genome context |
|
Sequence |
000001 GGACGCGGAA GAACTGGCCC AGCGGAGGTT CCCGCTTCTG AAGCGTGGGA GGCGGAAGAG ACTGCAGccc ccgcccccgt 000080
000081 ccccaagcct ccgcccctta gcccccgccc ccAGCTGCCA GTCCCCAGCA GCTCAGTCCT GCAGTGAGAG TCTTGGGAGT 000160 000161 CCATAGCTAA GCACCAGGAG CTGAGCACTG CCCGCTGTGC CTGCCTGCAA GTCTGACATG GCTCAGGAGA AAATGGAGCT 000240 000241 GGACCTTGAG CCTGACACAT CTTATGGGGG AACCCTGAGG AGATCCAGCA GCGCTCCCCT AATCCATGGG CTCAGTGACC 000320 000321 TTTCACAGGT TTTCCAACCT TACACACTTA GAACTCGGAG GAATAGTACA ACAATTATGA GCCGTCACAG CCTGTTGCTG 000400 000401 TCATCCTCAC CTAATCGTAT TCCTAGTAGC AGACTGCATC AGATCAAAAG GGAAGAAGGC CTGGATATGG TGAACAGAGA 000480 000481 AACTGCACAT GAAAGGGAAA TGCAAACGGC AATGCAGATA AGCCAATCAT GGGATGAGAG CTTGAGCCTG AGTGACAGTG 000560 000561 ATTTTGACAA GCCGGAGAAA TTATATTCTC CTAAGAGAAT TGACTTCACT CCAGTTTCTC CAGCACCTTC ACCCACCAGG 000640 000641 GGATTCGGAA AGATGTTCGT GAGCAGCAGT GGATTGCCAC CAAGTCCAGT TCCCAGTCCA AGACGATTTT CAAGGAGAAG 000720 000721 TCAGAGTCCA GTCAAGTGCA TTAGACCCAG TGTTCTTGGT CCTCTTAAAA GAAAAGGTGA AATGGAGACA GAAAGTCAGC 000800 000801 CCAAGAGACT CTTCCAAGGC ACTACCAATA TGTTATCTCC AGATGCCGCG CAACTGTCTG ATCTCAGTTC ATGTTCAGAT 000880 000881 ATTTTGGATG GCAGTAGTAG CAGCAGTGGC TTATCCTCAG ACCCGCTGGC TAAAGGCAGC GCTACCGCAG AGTCTCCAGT 000960 000961 AGCATGCTCC AATTCATGCT CTTCGTTCAT CTTGATGGAT GATCTCTCAC CCAAGTGACT TAACCATTTC TGATTCAACG 001040 001041 TTTTAACTGC TGTTTCCTAC ATAAAATGTT TAGTGGGG |
Predicted Small Protein
Name | NONHSAT138645_smProtein_842:961 |
Length | 40 |
Molecular weight | 4438.2915 |
Aromaticity | 0.102564102564 |
Instability index | 88.9564102564 |
Isoelectric point | 10.0523071289 |
Runs | 6 |
Runs residual | 0.0148944193062 |
Runs probability | 0.0415121003357 |
Amino acid sequence | MPRNCLISVHVQIFWMAVVAAVAYPQTRWLKAALPQSLQ |
Secondary structure | LLLLLEEHHHHHHHHHHHHHHHHLLHHHHHHHHLLLLLL |
PRMN | LLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLL |
PiMo | oooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiii |