NONHSAT138908
Revision as of 02:52, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT138908 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2380 nt |
Genomic location |
chrX-:146990949..147003676 |
Exon number |
3 |
Exons |
146990949..146992513,146993160..146993746,147003449..147003676 |
Genome context |
|
Sequence |
000001 CAGTCATTCC ATTAGTTTAA TACTGAGTTG TTCAGAAACT TCTCAGTCAG TAACATGAAG ATCCATTCCT GAAAAGCACT 000080
000081 CAAACTGGAC TTGAATTTTT AAAAAATGAA GAATAGAATT AGCATAAAAT ATTAAAGAAC CTCATCATTA AAATTATATA 000160 000161 ACGAGACACT TACTTGTTTT CAAATGCAAC TGTTATTGAA TCTTCATGAA CATCCTTTAC AAATGCCTTG TAGAAAGCGC 000240 000241 CATTGGAGCC CCGCACTTCC ACCACCAGCT CCTCCATCTT CTCTTCAGCC CTGCTAGCGC CGGGAGCCCG CCCCCGAGAG 000320 000321 GTGGGCTGCG GGCGCTCGAG GCCCAgccgc cgccgccgcc gccgccgccg ccgcctccgc cgccgccgcc gccgccgccg 000400 000401 ccgccgcgct gccgcacgcc ccctggcagc ggcgcctccg tcaccgccgc cgcccgcgct cgccgtcggc ccgccgccCG 000480 000481 CTCAGAGGCG GCCCTCCACC GGAAGTGAAA CCGAAACGGA GCTGAGCGCC TGACTGAGGC CGAACCCCCG GCCCGCTGCG 000560 000561 GGTGTAAACA CTGAAACCAC GTCACGTGAT CAACGCTGTT CCCTCCCCCC GCGGGCTCAG CCCCTCGGCC CCGCCCTCTC 000640 000641 TCTTCAAGTG GCCTGGGAGC GCGCGCATGC GCGCTGCTGG GAACCGGCCG GGGTGCCGGG TCGAAAGACA GACGCGCGGG 000720 000721 CCGGGCGTGC GCGGGCTTGG TGGAGGGCGG GAAGGCTGAA GGGCGGTGAC AGGTCGCACT GCCTCGCGAG GGCCAGAACG 000800 000801 CCCATTTCTG CAGAGCTGCC TTAATCCATG TTCCCTTCGG GATGCTGGTa tccaactgag aagttgacgg agcatctatc 000880 000881 gtgtgccaga cactgtgcta agtgctaacg agaaatcggt gagcaaaaca gaaaagaaaa aaaaagaaga aacgactgcc 000960 000961 agcattgaac ttagtaccta gcaaagtagg tggacataaa tcaaattgtc agacaagtaa atgagtagtt gcagctgtga 001040 001041 taaggggtat gaagaaTAGG CGCTTCCATG ATGGCGGAAC ATGACCTAGT CTGGGGTGGA GAAGGGGAGA TGATTCCAGC 001120 001121 TGGAATATGG CAGGTGAGAG TTAACTAATA GCACTGAGTT GGCAGAGGCA GGATGACCTG CCCCAGGCAG GTGCCCCAGA 001200 001201 ATGAGAGGAT GTTGCTGCTG GTGGAACTCC AGCTTTAAAG CGGTGGATCT AGGGCCACAT TCCTCAAGGC CATAGCAAAC 001280 001281 AGGAAAGACC TTTTGGACTA GGGTCTTTGG AGTAGTCACA TGAGGCCAAG AACCCAATAG GGCTGAAAGA GAATCTCATC 001360 001361 ATAGGCTGAA TGGGAGCAGA GCATTAGCTG CAACTCCAAT GTATTATAGT AAAAGGGGAC ACATTGATTA GAATGATTAT 001440 001441 ACCCCTCCAA GTGTAAGCTG TTGTTCAATT TACCCAGGGC TTAAAAATAT GTCAACTCTT CACAACCATT TTTACTACAA 001520 001521 GCCACACTCA ACCTGTGTTG TTCCCTGAAC CTGTGATGCA CTTTCATCCG TTCATGTCTC TACACATCCT TCCTGGGCCC 001600 001601 CATAGAGGCC CTGCACCTTA AGGTTTTCAG CTGGATTCCT ATTAGCTAGT TATTTTatct caggtacaga gagttaactt 001680 001681 tgctcctcaa ttttcagcac attgtcatat cagtccctac agggtccttg tttacattat tttatagtgt ttatattatt 001760 001761 ttttcctcat ctttctcgat ccccactctc attcttctag acacaagctg caatatgttc gatagagatc cttgataatt 001840 001841 taacacagat aatgttttgt ttatgcctct tgcatttaca gagatggtat tggactgtaa atctctattt cccactgttt 001920 001921 tactcaacag tctgtttttg agctataccc acattgctgt gtgtacacct agtttgctac CGAGTATGCC AGAAATTTTA 002000 002001 TTCATACATA TCCCTACTGA TCGGGCATCT AGGTTACTGC CAACTCCCTG AAGTCATACT GTGGTGAAAA CCCTTGTGAA 002080 002081 TGTCTTTACA AACCTTTGCC AGAACTTATT TTGTGCTCTT GTAGAACTTT GTGCATACCC TCTGCTTCct cattacactg 002160 002161 cttggcatat agcagagact caacaaatgt tgaatacctc tactatGATG GTTAGtgtac tagaataatt tatttatatt 002240 002241 tctgttttcc ttattggatt attagtacct tccagacagg gcaaatgtct tttctatctt tgtgtccctg gcacattaaa 002320 002321 agtggttgat ttcaaggtat gttcaatgaa tgaataaatA CTTATCTTCA CTGCCAGTAC |
Predicted Small Protein
Name | NONHSAT138908_smProtein_1862:2050 |
Length | 63 |
Molecular weight | 6914.2423 |
Aromaticity | 0.0806451612903 |
Instability index | 73.1467741935 |
Isoelectric point | 5.97674560547 |
Runs | 11 |
Runs residual | 0.0237788018433 |
Runs probability | 0.0867177337767 |
Amino acid sequence | MPLAFTEMVLDCKSLFPTVLLNSLFLSYTHIAVCTPSLLPSMPEILFIHIPTDRASRLLP TP |
Secondary structure | LLLHHHHHHHLLLLLLLHHHHHHHHLLLLEEEEELLLLLLLLLLEEEEELLLLLHHHLLL LL |
PRMN | LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL LL |
PiMo | oooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiii ii |