NONHSAT139282
Revision as of 02:53, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT139282 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2915 nt |
Genomic location |
chrY+:2477306..2525270 |
Exon number |
9 |
Exons |
2477306..2477522,2479037..2479079,2480191..2480259,2483857..2484010,2486781..2486825,2487470..2487538,2491426..2491494,2494638..2494683,2523068..2525270 |
Genome context |
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Sequence |
000001 CTGGGCTGAG TTTGCAGGGC TGCTCCCCTC ACCCAACCCC TTCGAGTCCT CCGCGGGCTC CGCCCCACCC GGCCCGTGGG 000080
000081 GGAGGTTCCG TCCCGCCGCC TTCGCCCGCG CGCTGCACTC GCGGACGATC TCTGCTCGCC TTGGGCGCGC CGTGGCGCGC 000160 000161 GGGGCCGTGC TGGCGCTGCG GCTCCTCGGC CTGCTCCGCC GTCTGGTGGC CGCCCCGGGC TGACTTTGAC TTAGCGATGC 000240 000241 CTTTCCTGAT GGAGGAAACA GTGACCCAGC ACCACCTAAT GCCCCCAAAC CAAAGCCAGA TCCAAACCCC AACCGACCTG 000320 000321 GTTTCACTGG TGACCCAGCA CCACCTAATC CCCCCAAACC AAAGCCAGAT CCAAATCCCA ACTGACCTGG TTTCACTGAT 000400 000401 AAGAGCCTCT AACCCTACGG GGTGGTCTCT ATGTTGTTTA CCTGGCAGTG ATGTCCGTGT CATCTGAGAA GAGGAGATTT 000480 000481 CAGGGGCTGA CTTTGACTTA GCAGATGCCT TTCGTGATGG AGGAAATAAC GACCCAGCAC CTCTTAATTC ACCCAAGCTG 000560 000561 AAGCCAAATG CGAACCCTGA GCAGCCTGGA TTCATTGACG AGCCAGCACC ACTGAACCCA CCCAAACCAA AGCCAAATCC 000640 000641 AAACCCCAAG CAGCCTGATT CCACCGGGGA TGACTTTGAT TTCACAGATG TTTCTTCATG GTGAACGAAA CAAAGCATCT 000720 000721 CCTGGGAATC ACCCCTGACC AAAAGCCCCA GGCACCTCTC CAAGACCCCC TACAGAAGCC TAAACAGCCC TTACATTCAT 000800 000801 TGCCTTTGGA CCTACCCGAA GTCAACAAGT TCCAAACTCG TCAGAAACTG GGAGAAGTCT CAGCCCCAAA TCAATAGCAG 000880 000881 CCGTTGTCAG CTCCTCCCAG CTCAAAGTCC CCCAGAGATC GGTTCCCTGG TCTGAGTCAG GAACGAGAGA CTGAAAAGCA 000960 000961 TGGGGATCTG GTGCTTTTTC TTCATAGGGT TAGTCGCTTT CCCCACCAAA AAACCTACCA ACTGAAAGAT CACTGATTGG 001040 001041 ATGGGTCAAC CAGCCTCAGC TACCAGATGT CTTTGAGATG GGGAGCCAGC CCCCTAAAGC TGAGTCTCTG TGTGTGGCTT 001120 001121 CCAAATACCT GGTCCCCTGG GTGCAGACAG AAGAGAGGAC GCAGAGGCTG GACATCTCCC AGAGGAGGGG GAGACTGGCT 001200 001201 GGTCACCAGA TAATCTTGCT TCCCTCTCTG ATGTCATAGG AACATGAACA GACTTGGAGA TGCTGATTGA AAGTACATGT 001280 001281 CACCTGAAGG AGACATTGGT TCCAGAGCCA TTAATTCCTA ACCTCCTACC ATACTCTCTG CATGGTGGAA GATGCCAGAA 001360 001361 CATTCTCAGA GCTTGAgaaa aaagaggaat tgagagaagg gacgggggtc aagagataga gaaggtgaga ggaatgtgag 001440 001441 agaagcaggg gacggaggag aagagaggaa ggaTAACTCA GAAGCTCAGG TCTAACTTCA CCCCACTCCC CTTAGGACCC 001520 001521 CCCCACTCTA ACTGTTGTTT CTGAGAGTTC CTGGGGGCCA CCCATAAACA ATGAGGTTAA ATGTAAATGG AAGGGCAGGA 001600 001601 CTCTGTTGAA GTCTGCAGAA GGTACCCTGT TGGCTGCATA GTCACCAGCT CTCATGACCC AAAGAGGAGA GTGAGCAGGT 001680 001681 GACTGGATCA TCAGTGAGGG TAAATCTGGA AGACAGAATT GGAgccaggt gcagtggctc acaactgtaa ccccagcacc 001760 001761 tttggaggcc aaggtagaag gagcacttga gcctcaggag tttgagacca gcctgggcaa catagccaga ccctgtctct 001840 001841 acaaataatt tttaaaaatt CATTGAAGGA TTTCTAAAGA CCACTTGAGT GGTTTATGTC TCCTGGAGTC AGAACCCAGG 001920 001921 GAGGATTTTT GCTGAAATAC CAAAGCCGCA GGGAGCATGA ATAGAGATGT TCAGACAGAA ATTAAGTTTG AAGAAATAGA 002000 002001 CTTTGGCAGA GAGGCACGTG GCCACAGACA AGAACTCATC ATGCATTCAT TCTTTCACTC ACTCAGCAAA CATTAAATGG 002080 002081 ACTCTGTCTA ACTGCATTTC CCTCTCTTGA CAAGAGGGAT ACATCGGAGA GAGACAGGCT GAAGGAATGT AGAGTTGATA 002160 002161 TTGGACCTGG GAGCTTTCCA AAGGCACTGT GCTCTCCTGT GCCCTTCTTC GCATCCCAGT CTCTACGATG TTGACCGTGT 002240 002241 TCGTGGGTTT CACATTGCTG TTGACATACC AGAAAGAATA TGCATGAACC ACAGTGACAA ATGTCATTCA TAATCATTTT 002320 002321 CAGCACAGAA TAACCTACAG AAATGTCTTC TGTGTACCTT CCCCTGCAAT ATTTTGTGAT TCTGATGCAA CTGGAGACAA 002400 002401 AACATCTCTT ATCCATGGCC TCTCTTGAAT CAATTTTATC TCCAATCTGC CTTTTCATGG GTACTCTAAC AAGAAAGCAA 002480 002481 ACAAGGAAAG TTCAGCTGGT CTAGCAGTTC TGAGACAGCA AATTATCTCA CTGTTGATGT GGACAAAGAG CCTCTTGCAG 002560 002561 AAAGACTATA CTTAACTCTG AGAATCTGGG TCCCAGCTTT TTTTTTTTTA ATCCAGAGAG ACGTAAATCT GAAAGAATCT 002640 002641 GAGTCCCAGC CGAGCTGAGA GAGGAGTAAA ATCACGGAGG CATGCCTCCA CTCAGAACAC ATCATTATCG TGCTTTTATA 002720 002721 TGGAAGGCAC AGCCATTCAC TCATTGTCCG ATAGACGTTT CCATTGAACG TTGGATCTCT TCAAACCAAG TGTCTGCAAA 002800 002801 CATGATGGGT TTTGCACTGA TGCTGAGGAT GAATCCAACA GGAAAGATAC AGAGaaacat cacattgcac cccagagaca 002880 002881 tatgcaatta ttgtttattg attaaaaata TAATG |
Predicted Small Protein
Name | NONHSAT139282_smProtein_236:466 |
Length | 77 |
Molecular weight | 8451.6687 |
Aromaticity | 0.0263157894737 |
Instability index | 48.1907894737 |
Isoelectric point | 5.60296630859 |
Runs | 13 |
Runs residual | 0.0296430732002 |
Runs probability | 0.045690486867 |
Amino acid sequence | MPFLMEETVTQHHLMPPNQSQIQTPTDLVSLVTQHHLIPPNQSQIQIPTDLVSLIRASNP TGWSLCCLPGSDVRVI |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHLLEELLLLLLLEEELLLLLEEEEELLL LLLEEEELLLLLEEEL |
PRMN | - |
PiMo | - |