NONHSAT140989
Revision as of 03:00, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT140989 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2430 nt |
Genomic location |
chr16-:21443345..21445776 |
Exon number |
1 |
Exons |
21443345..21445776 |
Genome context |
|
Sequence |
000001 GCCTCATTTT TCCCGGCTCC TATTTAAGAT GGAGTTGCTC TGGTTCACAC ACCTCTGACA TGATCATTGC CCACTGCGGC 000080
000081 TTCCACCTCC CGGGTTCAAG AGATCCTCCT GCCTCACCCT CCCAAGGTGC TGGGACTACA GGTGTGTGCC ACCAGCTCAG 000160 000161 CTAATTTTTG TATTTTTTGT AGAGATGGTG TTTTTCCATG TTGCCCAGGC TGGTCTCAAA CTCCTGGGCT CAAGCAATCC 000240 000241 TTCTGTCTCA GCCTCCCAAA GTACTGGGAT TACAGGCATG TCCCACCATG CCCAGACTAA TATTTACTTT TAATCAGACT 000320 000321 AAGATAGGGT TACTACTTGA GTTGCTATGG CTCCAGCTGA AAGAAAGCCC GTGCAGTCAT ATCACGCGTA AACATTTGCT 000400 000401 TTATGCTAAA AATATGGTGG ACCTGGCATT ACAGCTATTA CAAATCTCCT AAGATGTCTC GGGTAGTGTA TTAGTTACTT 000480 000481 TTCATACTGC TATGAAGAAA TACTGGAAAC TGGGTAATTT ATAAAGAAAA AGAGGTTTAA TGTACTCACA GTTCCACAAG 000560 000561 GCTGGAGAGG CCTCAGAATC ATGGTGGAAG GCAAAGAAGG AGCAAAAAGG TATGTCTTCC ATGGCAGCAG GCAAGAGAGC 000640 000641 ACGTGCAGGG AAACTGCCCT TTATAAAACC ATCAGATTTA GTGAGATGTA TTCACTATCA CGAGAACAGT ATGGGAAAAA 000720 000721 CCTGCCCCCA TGATTCGATT ACCTCCTACC GGGTCCCTCC CACGACACAT GGGGATTATG GGAACTACAA TTCAAGATGA 000800 000801 AATTTGGGTG GGGACGCAGC CAAACCATAT CGGGTAGCAA CAACCTAGGG TCAGTTTTGC AGGTGGTAAA GCCATTTACC 000880 000881 AAGATAGTTG TAGGTAAAGA AGGGCAGATT TATTAGAGAA ATTGTGAAAA TATGTTGCAG TGGGCAGCTC AGCAGAGAAG 000960 000961 GGGCTACCTG CAAAGAGGCA AGGGCTGGAG GAAAGTTTTA TAGGGTCCTG CTGAAGGGTG CTACGTGTGG AATGAGGTCA 001040 001041 TTGTGCCCGC AGGTTGTTTG TGATTAGCTG TCTCTAACAA TTGTTCATAC AATAATTGTT CATTATTGTT CTCAACTTGG 001120 001121 GGCTCTCCCC AACCTGGGGA CCCTTCCTTA TTGTTGCTTA CTTATCAGGT CTCCACATAA AGGTGTGGAA ACTTCATTCA 001200 001201 TTCATATCTT CAACACAAAT TGTAGGTAGC CTGTTTTTTA AAACATTTAT TCAACAAATA TTTAGTCCAA GCCACTATTA 001280 001281 CTTACTACCT TCTCTACTAT TGTATGGACT TTTAACTATC TCTGACACTA TTCACTATTC TTCCACATTC TCTATTATTT 001360 001361 ATACCTATGG TAAAATTTGC CAGTTTGACC ATACAACTAA TACTCACAGG GAATATATAG AGTCTAGAAG AAAATATACA 001440 001441 GGTCCTTAAA GGCTGCCCTG CCAACAAAAC CATAACGCAG GAACAAACAT CACAACTATG CCAAATAATC AATCCTACAA 001520 001521 TGTCCAAAAT TTTACTTTAA AACTGGAATT ACCAGACTTC CTTTCTGCAT TAACCAGTTT AACTAGACAG TAACGAAATA 001600 001601 TTCCTACTTT ATGCTGTGAT AGTTTGTTTG TTTGTTTGTT TGTTTATTTA TTTATTTATT TAAGACAGAG TTTCGCTCTT 001680 001681 GTTGCCCAGG CTGGAGTGCA GTGGCACGAT CTCAGCTCAC CACAACCTCC GCCTCCCAGG TTCAAGCGAT TCTCCTGCCT 001760 001761 CAGCCTCCCG AGTAGCTGGG ATTACAGGCA TGTACCACCA CGCCCGGGTA ATTTTGTATT TTTAGTAGAG ACGGGGGGTT 001840 001841 TCTCCATGTT GGTCAGGCTG GTCTAGAACT CCAGACCTCA GGTGATACCC CTGCCTCAGC CTCCCAATGT GCTGGGATTA 001920 001921 CAGCTGTGAA GCCACCGCGC CCGGCTGCTG TGATAGTTGA GATGTAAACC AAAAATAAAA TTCTAAGCCA CCCAGTCCGA 002000 002001 CTGAATGGAC CCTTCCTGTT GAGCAAGGAC ATTCCAAAGT AAACTGAAAA GACCAGCTTA GGCCATGATG GGAAGGGGAG 002080 002081 GTGTCAACAT GCCTCATTCT ACCTTCCTCC CTCTGGAATC CAGACACAAC TGACCAGCAT TAACATTAAA ACAGAGATCT 002160 002161 TAAGCTGGGC ACAGTGGCTC ATGCCTATAA TCCCAGCACT TTGGGAGGCC AAGGTGGGAT CACCTGAGGT CAGAAGTTCA 002240 002241 AGACCAGCCT GGCCAGTATG GTGAAGCCAT GTCTCTACTA AAAATACAAA ATTAGCCGGA CATTGTGGTG CACGTCTGTC 002320 002321 ATCCCAGCAA GGCAGGCGAA TCACTTGAAC CCAGGAAGCA GAGGTTGCAG TGAGCCAGGA TCATGCCATT GCACTCCAGC 002400 002401 CTGGTCAACA GAGCGAGACT CCGCCTCATT |
Predicted Small Protein
Name | NONHSAT140989_smProtein_539:799 |
Length | 87 |
Molecular weight | 9733.8976 |
Aromaticity | 0.104651162791 |
Instability index | 49.1186046512 |
Isoelectric point | 9.65313720703 |
Runs | 9 |
Runs residual | 0.0349704963554 |
Runs probability | 0.0476554986359 |
Amino acid sequence | MYSQFHKAGEASESWWKAKKEQKGMSSMAAGKRARAGKLPFIKPSDLVRCIHYHENSMGK TCPHDSITSYRVPPTTHGDYGNYNSR |
Secondary structure | LLLLLLLLLLLLHHHHHHHHHHLLLHHHHHHHHHHLLLLLLLLLLLEEEEEEEELLLLLL LLLLLLLLEEEELLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |