NONHSAT141399
Revision as of 03:01, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT141399 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4359 nt |
Genomic location |
chr16+:25268857..25273215 |
Exon number |
1 |
Exons |
25268857..25273215 |
Genome context |
|
Sequence |
000001 CCGAGTGGGT GGGGCCGGAT GTGCAGGCCC CGCCCGGCGC CAGGTTCCGG GCTCGGGTCA CCGCAGCACG TCCAGGCCGC 000080
000081 CGCGGGTGCC GCTGGGGCCG CCGGATTCCG AGAGCGGCGC CGGGCTCTTT CGGGCCCACG ACGGCCCCGA CCGTCCTGAG 000160 000161 GAAACCGCTG CCGCCGAGGA AAGGCCGCAA AAACTGTTCC GCCCGGAAGG GAGAAGAGCT GCGGGGCGAA GCCAGGGCTC 000240 000241 GCAGGGGGCA GCGGCAGGCT GCTCGCGTTC GGCCTCGTCC ACTCGGCCCG CGGAGAGCGC GGGGGGCGCT GGGAACCGCA 000320 000321 GTCACGCATG CGCCGCCTGC CACCGAgcgc cgcggggccc gcgcgaggcg tcctggcggg cgaggggctg ggggaggggg 000400 000401 ggggggccgT GCGGTGGACT CTCGCGAGAG CGCGCGGCGC GGTGACTCGT CGCTGAGGGA CTTTAAGATT GTAGAGGGGC 000480 000481 GCGGAGGGTC CTCCCCGGGG CGGAGGGACA CAGAGGGATT CTAGGGAACC TGCCGTCGCG AGTCCCGCTT CAGGCGGAGA 000560 000561 ATCTAGGCGG CGGCGGGGCC TCCCTGAGGC GGAGGAGTCG GCACCGGGGC CTGGCTGCCG GGGAAGGAGA GCACGGGAGC 000640 000641 GGGGACTCCT GTGTCTGGCG GAGGGACACG GCGTTCCGGT GGAGGGATCT GTTCCTTGTA CCTGGTCCAG GGTTGCGGTC 000720 000721 GGGGATGGAG CGGTTACCCC GACCCTGCGG GACCTTCTTC CTCTGGCGGA GGTGCACGGC GCGGCGTGGT GTTTTTCTGG 000800 000801 CGGAAGTATC TGTGCGTGGC CCCAGGCCCT TCCCGGCGCG GTCTCATCTG GGGCCACTTG TTGGCCCTCG CGTTGGGGAG 000880 000881 GTTCATGTGG TGCATCCTGA TGAGAAGGGG GGTCACAGGG GTCTCGGGGC CAGGGTTCAG CCAGCCAGGC CCCAGCTTGC 000960 000961 TCTCTTCTGG TGCTGCCCCT GTCCCTGAAT TCATAGACCC GGCTTTCCCT CTCttgagca cctactatgt gccaggctgc 001040 001041 gctttgcgca tgtagcagag gcaacagtgT CACCTGGGAA GCTGGTTtcc cccaaaggaa ctcttgtctg tccgttgttg 001120 001121 cagagccagc gcatgagacc aagtgtgagt atcaggcagt gcagccttca ttcagtggcc atggaattgg agaagtggga 001200 001201 gggtagctcg caaatcaagc tctcagctct tggaaactga gaagttacag gtaataggga gtgttgacga aaagtaaaac 001280 001281 cgtgcaaaat atttgaagag atttattgtg agccaaatac gagtaaccac agcctgtgat acagccctct cgaggccctg 001360 001361 agaacatgtg cccaaggtgg tcggggtgca gcttggtttt atgttttagg ttggcatgag acatcagtca aatacattaa 001440 001441 atacattggt ttggtccagg aaggcgggac aacgcaaagg ggtgggggtg ggggcttcca ggctataggt aaatttaaat 001520 001521 attttctagt tgacaattgg ttgagtttgt ctgaagacct gggattgata gaaaggaagt gttcaggtta agataaaaga 001600 001601 tagtggagac taaggttctt ttgaagtctt atggtggctg ctcttagaga taatagatga caaatgtttc ctattcagat 001680 001681 cttcaaaagg tgttagactt ttagttaatc cgtttaggat tgggagggcc tggaagaaaa acatctagct atgttaatag 001760 001761 atgttcttta cagatgcaca ttttacccca caaaggatag cttttggggg aaaatgctgt cctttatgga agaaattgca 001840 001841 aaatagggca aggaaacatg ttttggggta aaatattttg actttctttt tgtcacgtaa tgttatgcca gagtcagaat 001920 001921 ggaaagtaag tcatcatata taggattaaa taaaacccat ctgatgagaa tttatggttt gtaggtcatg actccccaga 002000 002001 tcccttagat aggaatttgg gcaggattaa aaaaatcaag agtttaggct ggtcgtggtg gctcacgcct ataatcccag 002080 002081 cattttggga ggccaaggca ggtggatcgc ttgaggtcag aagtttaaga ccagcctggc caacatggcg aaaccccgtc 002160 002161 tctactaaaa atacaaaaat tagctgggca tggtggcaca cgcctgtgat tctagctgat tgggaggctg aggcatgaga 002240 002241 ctcaacttga acccgggagg cggaggttgc aatgagctga gattgtgcca ctgcactcca gcttggttga caaagtgaga 002320 002321 ctctgtgtca aaaacaaaac aaaacagaaa aaaaaaacaa aagaatcaga gcttagtcgt caggtgtcct taatgaaggg 002400 002401 gctgggcatt aagagcaagg cgaggaggca gaaggaaagc ttgagcccag gaattggaga ccagcttggg caacatggta 002480 002481 agaccctgtc tctaaaaaaa ataaaaatta agaacaagag gaggaatatt catgtttttt cttgggaagg gaggtagatt 002560 002561 ttcctggaat caaggagctg cccctttttt tgtccttttt ttggtctctt cgggtcatca cggtgattgt caactgtcat 002640 002641 ggcaaccagt gggaatgtca tttagtactg aagttggatt agaatgaagc tagaggttct tcagaggtcg agtaagctaa 002720 002721 gaaggaacct atgaccacag acaacctgtt ttctaaaaat aagcagagtt aaatctgagt aggaatttag ctatgtcatg 002800 002801 gaggcattgc attgggtaac aaAAGCCAGG TAGGCGTCCA GCTAAGTCCC CTAGGCCCTG CAACGGGTAA CAGCAGTACT 002880 002881 GACTCTATGT TAGAGAAAAG CTTGCTTGCT TGAGTATAAT TATTGTTTTG CCTGAGTTTG TAAACTATTC ACTAAAAACA 002960 002961 GCCACAGAAA AAAACAGGAC CTTCTTCAAC AGATAAAACA CACAGACCCG CAGCTTTGGG AACAGGCTGA TGGCCCCTGC 003040 003041 ACAGTCTAGT CACAAGGCAT TGACCAAGAA AGTAATGACT AACTGCCCAT CTGAGACTGC GCATGATTCA CAAGAATGtt 003120 003121 tctttgtttt gttttttgag acagtcttgg tctgtctccc aggctggagt gcagtgatgt tggttcgctg tagcctctgc 003200 003201 ctcctgagta gctgggacta caggcgtgtg ccaccgcacc tggctaattt ttgtattttt agtagagatg atgtttgact 003280 003281 atgttggcca ggatggtctc gaactcctga cctcaagtga tccacctgcc tcggcctccc aaattgctgg ggttacaagt 003360 003361 atgagccacc gctcctggcc CACAAGAATG TTTTGATCAT TATTTCTCCT AATTTTCCTT AAAATCCCTG GATCTAGAGG 003440 003441 CACAACTGAG AAaggtggtc tttgaatgct agtgcactgc cttttgcagg ttgctggttt ctcgaataaa gctaactttg 003520 003521 ctttcaccaa agcttgtctt ttgagttttt ggctttcagg cgacgagtgg cctggacacc agttCGGCTA CATGTATGTC 003600 003601 AGTGGGCAAA ACAAAAATCC TTATTCTGGG AGGTAGATAG CTTATTAGAA AACACAACCT AATCACTTGT TTCCCAAATG 003680 003681 TTAAAAATTG AGCCAATTTT AGCCCCAGAA GCTTAGGGTA CCATGTACAT AACAGGCATT ACCTGAGGGT GGGGCAGAGA 003760 003761 GAATCAGTGG GGTACCTCGT ATATGCCAGG GGTTGTATCA GCATCCTTAC ACAGCTCATT TTTCTTttta aataatactt 003840 003841 attgaggacc tatttaatgc cagatatggt ggtaggtagg gagcaaaagc aggattcccc tcccattatt gagttttcag 003920 003921 tctggtggga gaggcaggaa ttaaataagt aatccacaaa ctcaagtaca attctaaggg agatgggtgc caccaagaag 004000 004001 agacatggtg ctgagaacct atgtctgtca gagggatttg atctatttgg gaggtctgga aaggtttttt tgaagaagca 004080 004081 gtgctagggg tgagatccaa aggagaagag ctaattaggC AAAGCCtagt cctcacaaaa atcctataaa ccagatatga 004160 004161 ttaccttcat tttagagttt agggcattga gacttgagca aggtgatgtc actgcccaag gttacatcag attaaatggc 004240 004241 aacccaggat tcagattcaa atAAGAGTAG GGTTCTTTAT ATTCTCCTTG GGCTATTTGG TGGTTTTAGG AGAGGCAAGT 004320 004321 ATCACAAACA GCTTGGGGAC ATGAGGGAGc aggaatcac |
Predicted Small Protein
Name | NONHSAT141399_smProtein_3029:3277 |
Length | 83 |
Molecular weight | 9283.7593 |
Aromaticity | 0.109756097561 |
Instability index | 62.5573170732 |
Isoelectric point | 6.79217529297 |
Runs | 11 |
Runs residual | 0.00175535846268 |
Runs probability | 0.062637503814 |
Amino acid sequence | MAPAQSSHKALTKKVMTNCPSETAHDSQECFFVLFFETVLVCLPGWSAVMLVRCSLCLLS SWDYRRVPPHLANFCIFSRDDV |
Secondary structure | LLLLLLLHHHHHHHHHLLLLLLLLLLLLEEEEEEEEEEEEEELLLLLEEEEEELLEEEEL LLLLLLLLLLLLLEEEEEELLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLL LLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTiiii iiiiiiiiiiiiiiiiiiiiii |