NONHSAT142273
Revision as of 03:05, 17 October 2014 by 124.16.129.48 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT142273 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2510 nt |
Genomic location |
chr16+:47007627..47010136 |
Exon number |
1 |
Exons |
47007627..47010136 |
Genome context |
|
Sequence |
000001 CGGTGCGCCG TGACGTCGCT GTGCAGAGCC CGCCCCCGAG CGCCCGAGGC GCGGCCACTG GGGTCGAAGT ATTGAAGAGT 000080
000081 GGGCCAGGTT CTCTGTTTTC CTCCAGGTCC AGGCGGCTGG GCAGGGCCAA CGTAGGAAAT GAAGAACTGT GCACGGCGCA 000160 000161 CCCCAGGAAT TCAGCTTCCT CTCAAAAGCC ATGGTTGCGA GGTCGCGTGT TTAACCTCGC ACTGGCTGCT GAGGGAATTA 000240 000241 ACAGGCCTGC GCAGCAGCTT CGTTAGCTTC GAAAGAAAAT GGGCCCCGGC TCCCGCAGGA GGCCCGCCTG GCGCGCAGAT 000320 000321 GTCGTTATTA GAATCCGGGA CGTCGGTGGA CCCTCTGGGT CTGGCTCCCT CGGGGCTTAC GATGAAAAAA ACTGGGGGGC 000400 000401 GCGTGTGTGT GTATGTTGTG TTTTATATTA TGAGAATTCT GAAACATTTA GCAGAAGCAG TATATTACTC CCCATAGTGC 000480 000481 AGTTAGCTAC CTTTTACCTG TTTCATTGGC TCCACCATAC ATTTCTAGTG TTTTAAGGGA AACCGtttca ttcataaata 000560 000561 ccctaagtgt atatatttaa tatctaagag acaactttta aaggcataac gatgtaatct catctaatga aattaacaat 000640 000641 tccttaatct aattcccagt ccatatttag gtttttcaga tgatctcatg tccttttaca attggtttgt ggcatccggg 000720 000721 tccaaaccaa ggtccacatg ttgcatctgg accacgtgtt taagcctctt ACTTGATAGC TTTAAAATTA GCTAACACCA 000800 000801 GAGGTTTAGA TGGTGTAAGG CAAGTCTGGC CACCAGGTGA CTTGATTTAC ATTCGTTTTA GTTTCGCTCA GAAAGTATGC 000880 000881 TGTGCATCTA CCAAGTGCTA TGATGTACAG AGGCCTGGTC CGGGGAGAGG AGTGTTACAA AAGTGCCTGC CTTCAACCCA 000960 000961 TTTACGGTTT ATGGAGACAG AAAAGTAAGG TTTTCTGATC CCTTGGAACC TGAACTGATA GCAAAGACTT CAGCATAAGC 001040 001041 ATCTCACTCA GGATAATGTT TCTTCCTTGG CGTTCCCTTT GACCTAGTTG TGGAGGGCCT GAATTCCATG ACAAGGACTC 001120 001121 TGAAATTTAG CTTGAAAACC CTAAGAGTAA TCAGTGATAA GTCATTAATA GTCCTTAAAC CCTTTTCCTC AAATCCCATC 001200 001201 TGAAATCCTG CTCCCTCTGT GAAGTCTTCC TTTACTGGGC ACTGGTGAAC ACTGCTATCT CATTCGAGTT CCCACCACCC 001280 001281 TTCGTTTGTA CCTTTTGTGG TAGGATCTCG AACTCttttg tttttttttt tttttttttt tttttacttg aaacagcgtc 001360 001361 tcgttatgtc gctcaggctg gagtgcagtg gcgccatctc agctcgctgc aacctccacc tcccggcttc aagtgattct 001440 001441 cccacctcag cctctcgagt agctgggatt acaggcgccc accaccatgc ccggctaatt tttgtatttt tagtagaggt 001520 001521 ggagcttcac catgttgacc aggctggtct cgaactcctg atctcaaatc atccacccac cttggcctcc caaagtgctg 001600 001601 ggattgcagg cctgagccac tgcCTCTGCC AACCGCCATT GCCGTGTAAA TGCTGACGTC ATCCTCATGC ACGGCTGTAA 001680 001681 AATCCAATTC TCTACTTTTC ACATTTTGAG ATGTTCGTAA GAGACGGTGT AAAGTTATGG Cgaggttaga ctgtgtaggt 001760 001761 tggtagtctg actctgccat ttaggaacaa tgtgaccttc agcaagttac ttaacttttc tgaggtttcc tcaggtgtaa 001840 001841 gatggggctt gttatttttt atatcattgg tttaaaagag ttatacattt ctattactta gggctgggcg cagtggcctg 001920 001921 taatcccaga actttgggag gctgaggcgg gatcactcct gcctcaagtc ctgatcactt gaggtcagga gttcgagacc 002000 002001 agcctggtca acatggcaag accccgtctc tattaaaaac acaaaaatta gctgggggtg gttgcgcacg cctgtagtcc 002080 002081 cagctactcg ggaggctgag gtgggagaat cccttgagcc caggaggtgg gggttgcagt gagccaagat cacaccactg 002160 002161 cactccagcc tgggtgacag agtgagaccc tgtctcaaaa taataataaa taattaaaat ttaaaaaatt aCTAAGAAGC 002240 002241 TAAAAGAAAT TAAGTATAAA CTATTGTTCT TGGCCCATAT GCTTACGTTG TCTTTGCTCA TTTAAATTTC TGGCTTTTCT 002320 002321 ACTGGGATTC CCTGACTTCT TCCATTACCT ATGGGGAATG CCCCTCCGTC CCTTTTCATG ACCTCATCTT CCCAAATCTC 002400 002401 CTTGCTTGTC AGTTATCATT TTCTCTCGTC TCATTTCTCT GTTAGTTCCT GCTCCACGTA AGAATATGAA CTGAAAATCT 002480 002481 GTCTTTGTTG CAACCttcat attaatttat |
Predicted Small Protein
Name | NONHSAT142273_smProtein_278:535 |
Length | 86 |
Molecular weight | 9634.9759 |
Aromaticity | 0.141176470588 |
Instability index | 52.9330588235 |
Isoelectric point | 9.01837158203 |
Runs | 14 |
Runs residual | 0.0281639928699 |
Runs probability | 0.0454046483458 |
Amino acid sequence | MGPGSRRRPAWRADVVIRIRDVGGPSGSGSLGAYDEKNWGARVCVCCVLYYENSETFSRS SILLPIVQLATFYLFHWLHHTFLVF |
Secondary structure | LLLLLLLLLHHHLLEEEEEEELLLLLLLLLLLLEELLLLLEEEEEEEEEEEELLLEEEEE EEEHHHHHHHHHHHHHHHHHLEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLHHHHHHHHHHHHHHHHHHLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii iiTTTTTTTTTTTTTTTTTTooooo |