NONHSAT142670
Revision as of 03:06, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT142670 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1844 nt |
Genomic location |
chr16-:56395914..56397757 |
Exon number |
1 |
Exons |
56395914..56397757 |
Genome context |
|
Sequence |
000001 TCTCttttta aacagatgcc aacagtgaaa cggcattaca tgccacccca aaactcagat ttcaagcctc tcttgaaaaa 000080
000081 accagagcat ctggtaacac tgggcccCAC TGGTCTACCT CTGATGCTGG TACTGTCAGT CATCTCCCAT GGACCCCTTT 000160 000161 GGCCACGCTT GCCGAGAgag cacttgtgtg ctaacctgat ctaagccctt tatatgaatt actttaacag ctctaagagg 000240 000241 gagcactgtt aacccattca gctgacatac agctgaagaa atggaggctg gagaggttaG CACTGGCCTG GCCCTGGCGT 000320 000321 CTGTCTCCCA GGTCCTCCCT GTTGACCACT CTGCCTTTCA GCTGAGCATT GTACACACAC TCAGCGCATC TGTGCGTCAC 000400 000401 ACACCCATGG TTGGTGGCAG CTACAGCAGG TGTGTCCTGT GGATAGAGGG GGTTTTGTTC CAGCTCTTAA GGACAGGGCC 000480 000481 AGCACTGTGT TCCTCAAGTG GGTTTGGGCC CTGGCAGACC CTGTGATTGT GGGAGTTCTG TGCTGTGTCT GTGGGTGGAG 000560 000561 GGGATGGGCA GGAAGAGACA GCAGGGAACA GCACTGAAGG GTTCCTCCCT GGTGCAGAGA GAATTTGCGC CCATCTGTTG 000640 000641 GGGGCTGGAT GTCTTGGTCA TTGGGTGGTG CTGAGTGACA GCTTCATGAA GGTGCCTGGA CATGGGGAGA TGTGAAATCA 000720 000721 ACCTTCTGGC TGTGTTCCAC AGCTCCCCAT CTCTCCTATG AGAGAGAAAA AGTCTTCTGT TTTTTCTAGA CGTTTCTTGA 000800 000801 ACAAAAGTTC TGAAGATGAT GCGGCCTCAG AGAGCTTCCT CCCCTCGGAA GGTGCGTCCT CTGACCCCGT GACCCTGCGT 000880 000881 CGAAGGATGC TGGCTGCCGC CGCGGAACGG AGGCTTCAGA AGCAGCAGAC CTCCTAGCGC TCCCTTGCCT TCCTCAGCTG 000960 000961 CCTCCTGCGC CCTGTGCCCG ACTGACTGGA GGAGGCCTGT CCCAATTCTG CCCGCTCCAT GGAAAAGCGG GCTTGACTGC 001040 001041 ATTGCCGCTG TATAAAGCAT GTGGTCTTAT AGTGTTTGGA CAGCTGATAA ATTTAATCCT TCTTTGTAAT ACTTTCTATG 001120 001121 TGACATTTCT CTTCCCCTTA GAAACACTGC AAATTTTAAC TGTAGGTATG ATCTCTTCTG GTGTTGACTG GACTGCTTGG 001200 001201 GGTGGGGGAC GATCAGGAGG AAGTGAGCAG TCGCCTGCCT GCAGCAGGCA GCTTCTACTC CTGCCTCATG CGTACGTCCC 001280 001281 ACAAATGCAG GTGTCCTGAG CACCACACCC AGTGGGAAGA GTGTGGGGGA GGCGCACAGT GTGAGCCCGC CCCCACGTCG 001360 001361 TGGGGTAACA TCTGTTATCA AACTGCTGTC GTTGTTGTGG AAGCATGTAG ACTGTGCCAG AGGCCAGACC CACGGGCTCA 001440 001441 TGCACCCCTG AGCCAGCAGG GCATCTTGGA AAAGGAACTC TTGGTTCGAT ACCTGGAGCA GAGGAGGGGA AAGTCCAGGG 001520 001521 CTATAGGGTG TGATGAAGTC ACCCCTTTCT GTCCCACTAC ATCTGGGACT GACTTTCCGA GCCTCCAGTC CAAAGCCGGC 001600 001601 TTGATTTCCG TGAACTCTGG TGCTCCTGCA TCTCATGAGT GTGCCCCATG GGTCCCCTCC CCTCTCAGCA TTTCCTTGTC 001680 001681 CCGTCTGGAC CTGGGGAGTG GTTAGGCAGC AAGCTTTGGT TTATGGTTTT CATTCATTGG TGAAGTAAAT TAGGCAGTGC 001760 001761 TAAAGCCTGT GGGTTTGGTC CTTGAACAAG ATGTGGGCCT TGCAAGATGG GAGAGTAAAC CTTGAAGGGC TTTATTAAAG 001840 001841 AAAT |
Predicted Small Protein
Name | NONHSAT142670_smProtein_1634:1747 |
Length | 38 |
Molecular weight | 4079.7474 |
Aromaticity | 0.135135135135 |
Instability index | 49.0405405405 |
Isoelectric point | 9.30438232422 |
Runs | 6 |
Runs residual | 0.017604760724 |
Runs probability | 0.0114820703056 |
Amino acid sequence | MSVPHGSPPLSAFPCPVWTWGVVRQQALVYGFHSLVK |
Secondary structure | LLLLLLLLLLLLLLLLLLLHHHHHHHHEEELLEEELL |
PRMN | - |
PiMo | - |