NONHSAT142914
Revision as of 03:07, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT142914 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
558 nt |
Genomic location |
chr16+:61187777..61189854 |
Exon number |
2 |
Exons |
61187777..61187969,61189490..61189854 |
Genome context |
|
Sequence |
000001 GTATTTTCTC TATGAGGTGA TTTTTCTTTT TTTTTTTAAT TATACTTTAA GTTCTAGGGT ACATGTGCAC AACGTGCAGG 000080
000081 TTTGTTACAT ATGTATACAT GTGCCGTGTT GCTGTGCTGC ACCCATTAAT TCGTCATTTA CATTAGGTAT ATCTCCTAAT 000160 000161 GCTATCCCTC CCCCTTCCCC CTACCCCATG ACATTGTGGT TCTCCTTGAA GAGGTCCCTC ACATCACTTG TAAGTTGGGT 000240 000241 TCCTAGGTAT TTTATTCTCT TTGAATGGGA GTTCACTCAT GATTTGGCTC TCTGTTAGTC TGTTATTGGT GTATAAGAAT 000320 000321 GCTTGTGATT TTTGCACATT GATTTTGTAT CTTGAGACTT TGCTGAAGTT GCTGATCAGC TTAAGGAGAT TTTGGGCTGA 000400 000401 GACGATGGGG TTTTCTAAAT ATACAATCAT GTCTTCTGCA AACAGGGACA GTTTGACTTC CTCTTTTCCT AATTGAATAC 000480 000481 CCTTTATTTC TTTCTCCTGC CTGATTGCCC TGGCCAGAAC TTCCAACACT ATGTTGAATA GGAGTGGTGA GAGAGGGC |
Predicted Small Protein
Name | NONHSAT142914_smProtein_278:475 |
Length | 66 |
Molecular weight | 7530.8649 |
Aromaticity | 0.138461538462 |
Instability index | 51.2830769231 |
Isoelectric point | 8.73687744141 |
Runs | 6 |
Runs residual | 0.0579807692308 |
Runs probability | 0.0334010481069 |
Amino acid sequence | MIWLSVSLLLVYKNACDFCTLILYLETLLKLLISLRRFWAETMGFSKYTIMSSANRDSLT SSFPN |
Secondary structure | LEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLEELLLLLLLLL LLLLL |
PRMN | LLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLL LLLLL |
PiMo | oooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiii iiiii |