NONHSAT143809
Revision as of 03:11, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT143809 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
787 nt |
Genomic location |
chr16-:77775480..77797452 |
Exon number |
4 |
Exons |
77775480..77776006,77776740..77776897,77791284..77791349,77797417..77797452 |
Genome context |
|
Sequence |
000001 gcctggccAG AAGACAGtta ttgcctcaac ttacagCTCA TCCAAGATCA ACTGCAGAGG AGGACGAGGG AAATTTTATA 000080
000081 TGGGAACAAT TATCTGAAAA ATagaatgtc ctcatttgta tggtcaaggc tgggttgcag agaagtccat gttgcagctc 000160 000161 atggaaaaaa agaaccaaag ggactcaaga acactggctt atgtcttaga ttggagatga cctggaaagt caactttcac 000240 000241 ccataaccca ttggcctaaa ACAATAGAAG GCAACTGGAA AAGAGGCAAG GATTCTAACT ACATACTGCA GAAAAAATAT 000320 000321 TCACACCTGT CAAATTCCAA CAGCTGGCAT TGTTGTTGTT CTACGAATAA GCACACACAG AATCCTCGTG AATAGTTCTT 000400 000401 TGTCTCTTGC TCTAGTAAAT CATAACCTGC TTGTAGCTTT TTTATGAACC TTCAGGAATA ACTCTTCAGA GGATGCTAAT 000480 000481 ACATCATTAA GATTAAATTG AACCTCAAAG GTGGGTTTTT TTTCCAAAAT GATAAAGGCC ACCAACACTG CAAGGTTTGC 000560 000561 CGTCATTCCC TTGATCTGGT AAGTGACACC GTCTTCAGGG TTTGTGTACT CAAAGATATG ATTAATAAAA CGGTGACCAA 000640 000641 GACGTGTGAC GTAATGCTGG TCATGGACCT GTGGATGCAG GAAATAGGCC AGAGGCACCA GGAATACATC CTTAACTTCA 000720 000721 GCAGGATTCG GCTGGGCCTG GAAGTTGTGG TCTATTAAAC CCACAAATGG AGTTATCAAT GTATCTG |
Predicted Small Protein
Name | NONHSAT143809_smProtein_617:757 |
Length | 47 |
Molecular weight | 5515.5189 |
Aromaticity | 0.0869565217391 |
Instability index | 46.1434782609 |
Isoelectric point | 6.52386474609 |
Runs | 8 |
Runs residual | 0.0125517598344 |
Runs probability | 0.0283739621975 |
Amino acid sequence | MINKTVTKTCDVMLVMDLWMQEIGQRHQEYILNFSRIRLGLEVVVY |
Secondary structure | LLLLEEEEELLLLHHHHHHHHHHHHHHHHHHHLLLEEEELEEEEEE |
PRMN | - |
PiMo | - |