NONHSAT144250
Revision as of 03:12, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT144250 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1650 nt |
Genomic location |
chr16-:87117168..87336368 |
Exon number |
5 |
Exons |
87117168..87117512,87172030..87172161,87172817..87172960,87173791..87174709,87336259..87336368 |
Genome context |
|
Sequence |
000001 TTGTCCCCAT GTCCGTGTCC CTGGGGGAGG GCAGCTATTT CCGAGTGTCT CTTCAGGGAC AGCAGACCCA CTGGATGAGG 000080
000081 GCCCGAAAAT GGTTTCAGCA CCTGTGTCAG AGCAGAACGC AACCGGCGCC AGGGTCCCGG GGAGAGAGGC AGCAGGAAGT 000160 000161 GAGGCTGAGG GGCTGTCTGT GTCGCGCAGG GAGCCGGGCA GGGCTGTTTT CCATGGCTGC CGGCCCTCTC CTTAGATGAG 000240 000241 TACACAGCTG CTTTTCACAG CGCTCAGCCT GCCCTCCTGG AGGGATCATT TGAGGAGAAA ATCCATCTCA ACATCCACAT 000320 000321 GTTGTGTATC ACTTGAACGC GGGGCAGGGC AAGGAAGACC AAAGCTCCCC CACTTTCAGG AGGCGACTCC TCCTTCTTTG 000400 000401 CTGGACAGGG GCGAACAGGA ACCACGTTGG CTCTGGAAGT TCACAGGGCA GTGGATCAGG GCTCAGGAGG AAGAAGATGG 000480 000481 TGCAGCCGCA GGCACTTCTG AGTGACGAGA GGCAGGCATG CGTTGAAGGT GATCTGCAGG GCACTCACAC ACAGGGCTTG 000560 000561 GCAAGGTCCC GCAGTCGTGG GGAACGTGGA AGTTCTGACC CAGGCCTTCT GTCACCGGTC CCAAGCCCAC GTCGTTTCTG 000640 000641 CGACAGCGTG ACTGACCAGT AAGTCATCTG CTTACCAATG TCCCCCGAGC CAAGGACAGC GATGGAAAGC CGTGCGGTAT 000720 000721 CACTCCGGAA GAGGAAAGTC GGTGGCCTTT TAAGCAGGAT GAAGTCAATC CTACAGGCCA CATGGTTTGC CACGTGGCAC 000800 000801 ATGCCTCCCC CTGTGACCTC ATTCAATCCC TGCAGAGCCC CTGGCGGCCA TCGTCGTACG GTTGGCACCA GCATGGACTC 000880 000881 CAGAGCCCAC CACCTGGCTT ATGGCCCCAG CTCTGCCCTC ATTAGCGGTG GAACCTGGCC AGCAACTTAA GCTCTCCATG 000960 000961 CCTCCGTTTC TTCATCCATA AAATAAGAAT AGCACTGGTA CCCCTGCGCA GGGCTGCTGC GAGAATCAAG GTGCCTCGCT 001040 001041 GGAACTTAAC GTGAGGGGAG CCAGTGTGGT CTGTGGAGGC TCCTTTGAGC AGGTGACATC TGAGCTGCCC TCTGAAGATA 001120 001121 ACAAGGATCC AGACATGACG GGGAGAAGGA GACGCTGCAG GCAGAGGACA AAGTTAAGGA CGCAGTACTC CTCCCCTCTG 001200 001201 AAGGGCACAG CAACAAGGCG CCACCGTGGA AGCAGGGTCC AGGCCCTCAC CTGACATGAA GCCTGCCAGG ACCTTGATCT 001280 001281 TGGACATCCC AGCCTCCAGA GCAGGAAGTT GGATTTGTCT CCTACTCCAT AGAAGAAATA GAGGCCATCA GATAAGAATT 001360 001361 TCCTCAACTT GGCCAGGTGT GGTGGCTCAC TCCTGTAATC CCAGCACTTC GAGAGGCCGA GGCGGATGGA TCACGAGGTC 001440 001441 AGGAGATCGA GACCATCCTG GCTAACCTGG TGAAACTCCG TCTCTACTAA AAATACAAAA AATTAGCTGG GCGTGGTGGC 001520 001521 AGACGCCTGT ACTCCCAACT ACTTGGGAGG CTGAGGCAGG AGAATGGCAT GAACCCAGGA GGTGGAGCTT GCAGTGAGCT 001600 001601 GAGATTGCAC CACTGCCCTC CAGCCTGGGT GACAGAGCAA GACACCATCT |
Predicted Small Protein
Name | NONHSAT144250_smProtein_677:949 |
Length | 91 |
Molecular weight | 9786.1959 |
Aromaticity | 0.0666666666667 |
Instability index | 64.3677777778 |
Isoelectric point | 11.715637207 |
Runs | 13 |
Runs residual | 0.00458553791887 |
Runs probability | 0.0364029187558 |
Amino acid sequence | MSPEPRTAMESRAVSLRKRKVGGLLSRMKSILQATWFATWHMPPPVTSFNPCRAPGGHRR TVGTSMDSRAHHLAYGPSSALISGGTWPAT |
Secondary structure | LLLLLLLHHHHHHHHHHHHHHLLHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLEE EELLLLLLLLHHHLLLLLLLEELLLEELLL |
PRMN | - |
PiMo | - |