NONHSAT144856
Revision as of 03:15, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT144856 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1847 nt |
Genomic location |
chr17-:1614798..1619566 |
Exon number |
3 |
Exons |
1614798..1616189,1616997..1617308,1619424..1619566 |
Genome context |
|
Sequence |
000001 CTCGTGCGTC ACGACGCCGC CAGCTGATCG GAGCCTGGAG CCGGTGTGTG CTGGGTGCCG AGAAGAGACA GCGCCGCCGG 000080
000081 CCGTGGGGAG CGGACGCAGT GATTTGCTCC CCCTCGTGCA GCAACCCCCA CACCCAGCAC CAGGAGCCTG TTCCTCTCAC 000160 000161 GCCCTCACCT GGCTGAGCCG CAGTAGTTCT TCAGTGGCAA GCTTTATGTC CTGACCCAGC TAAAGCTGCC AGTTGAAGAA 000240 000241 CTGTTGCCCT CTGCCCCTGG CTTCGAGGAG GAGGAGGAGC TGCTTTCCCC ATCATCTGGA AGGTGACAGA AATGGGCTGG 000320 000321 GAAGGTCCGA ACAGCAGGGT GGATGATACG TTTTGGGCAA GTTGGAGAGC CTTTGCCCAG ATTGGCCCAG CAAGGAGCGG 000400 000401 TTTTAGATTA GAGACACTGG CTGGATTGAG GAGTAGAAGG CTCAAACAAC CCAAGGAAGC TGTGTCTGTT CGATTTGGTG 000480 000481 GGAGGAGATG TGCAGGGAGC TGTATCTTGT CCTCCGCTTG TGAAAAACTC AAGGATGTGG AGAAGAGTAG ACCGTGGAAC 000560 000561 CCTGCTCTTC TGCAGCCAAG CTGAGGGGCA GGATGCGTGT GGGACAGTGG TAGAGAAGCA GGGGATAGAC TCATAGGCTG 000640 000641 CAACAAAGGT GACTCTGTCC CTGGACACTG CCTCCGTACT TTCTCCTTGC TTCACTGGCC ACAGCATCTC CCTCCAGCCC 000720 000721 TCGCTATGTG CCTCTGCCAT CTTCACCCAT CATGGAGCAG AGGTGAGGAG AGGCAGCCTG GGAATATGGA GACCAGTGAA 000800 000801 GGACCAGGCC TGGAGAGCAC AGGGTCCTAC CTGGGCATCC AGCAGAGGAG CCCCTAAAGG CCAGGAGCAC CCCAAGAGGA 000880 000881 GGGAGGGCAG CCAGCCTCCA TTGACGGCGA GCCTCCAGCC CTCTCCTACT TTGATCACCA TTTCTCTCCA GGCTTTCTGC 000960 000961 CTCCGAGATG TGGCACCATA GTGCGGTGCC CTGTGGCTTC ACCGCCCTAC TTCCACCTCC GCCCAGCCTG TAATGTTTAT 001040 001041 ATAAGCAGCC TCAAGGACCA AGAACCATCT GCGAAAGGAC ACACACAGGA AATTCATAAA AGAAATCTGA ATGGATAAAA 001120 001121 CCATGAAAAA AAGTATGCTT CATTAGTAAT TAAAGAAAGG CAAATAGAGC TGGAAGCATT TTTCCCTTAG CAAACCATAA 001200 001201 CAGAAAAAAA TAAGACCCAA TATTGGCAAA GAGACTACTG AAAAAACATT CCCATACATT GCGTGTGGGA GTATACATCG 001280 001281 GTGCAGGCTT CCTGGATGAC AGTTGGGTGA TATGTGTCAT GTGGCCTAAA AGCCTCCATG TCATTTGACC TACGAATTCT 001360 001361 ATCTTTGGGA ATTTATCCTA AGAAAATACT TAAGGATTTA GTTAGTGATA AGATGTTCAT CCCAGCATTG CAATGGAGAA 001440 001441 AAATGGGAAG CAATGGTTTG GTTGGGAATT TATTCCTTTT CTGCTGTAAC GAAAGTTTGC AATAGGGGAT TGCTTAAGTA 001520 001521 AATTATTGTA TCTCCATCCA GATGGTGGAG TACCGCGCAG ACATTAAAAG TCATGTAAAA GAACATCTGA CTGAAAGAAA 001600 001601 AATGCTCCTT GAATATTAAA AGGTTGTAAA AATAGTGCAT GTTATGTGAT TTCAATTTTG TTTTTTAAAA TATGGGTGTA 001680 001681 TGCTTGTATA CGTAGAGCAG ATAAAAAAGA CGGAAGGCAT ACTAAAAAAT GTTGAGTGGT TATCTTTGTA TGGTGGAACA 001760 001761 AAGTCACTGT AATTTTCATC TTTGGTTTTT CTGTAATTTC CAAATTTTCC ACATTTTGTA TTTCATATAA TATAATTTAA 001840 001841 GAGATCA |
Predicted Small Protein
Name | NONHSAT144856_smProtein_311:583 |
Length | 91 |
Molecular weight | 10034.3875 |
Aromaticity | 0.0888888888889 |
Instability index | 69.82 |
Isoelectric point | 10.4857788086 |
Runs | 13 |
Runs residual | 0.00458553791887 |
Runs probability | 0.0453100158983 |
Amino acid sequence | MGWEGPNSRVDDTFWASWRAFAQIGPARSGFRLETLAGLRSRRLKQPKEAVSVRFGGRRC AGSCILSSACEKLKDVEKSRPWNPALLQPS |
Secondary structure | LLLLLLLLLLLLLHHHHHHHHHHHLLLLLLLLHHHHHHLHHHHLLLLLEEEEEELLLEEE LLLHHHHHHHHHHHHHHHLLLLLLLLLLLL |
PRMN | - |
PiMo | - |